| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3710 |
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| Symbol | |
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| ID | 5612055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4515323 |
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| End bp | 4516033 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640934663 |
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| Product | 3-oxoacid CoA-transferase |
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| Protein accession | YP_001475442 |
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| Protein GI | 157376842 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGATA AACGTATAGC TTCATGTCGC GATGCGGTGG CCGATATTTT CGATGGCGCG
ACTGTGATGA TAGGTGGCTT CGGCGAAGCC GGTAGTCCGA TAGAACTCAT TCATGCCTTG
ATCGATCATG GTGCCCGCAA CCTTACCGTG ATTAATAACA ATACCGGTAG CGGCCATGTG
GGTCTGGCGG CCCTGATTGA GAATGGTCAG GTGGGTAAGA TGATCTGCTC ATTCCCGCGA
ACCGCGAATT CGACGGTCTT TCCCGATCTT TATCGGGCCG GCAAGATTGA GCTCGAGTTA
GTGCCTCAGG GCACGCTTGC CGAGCGGATC CGCGCCGGAG GCGCCGGGAT CCCGGCCTTC
TATACGGCGA CGTCTGTGGG GACGCCGTTG GCCGATGGCA AGAAGCATGA GATGTTCGAT
GGACAGGAGT TTGTACAGGA GCGCGGTCTG ACTGCCGATT TTGCCCTGAT AAAAAGCCTC
AATGCCGACC GTTATGGCAA CCTGATATAC AACAAGACGG CGCGAAATTT TGCCCCCATC
ATGGCGATGG CAGCCAAGTG CACCGTAGTG CAGACACAGG TATTTGTCGA AGCGGGCGAT
ATCGATCCCG AGGTAGTCGT CACCCCCGGC ATCTTTGTTA ATCGTATCGT GACCGTCGAA
AATCCGGCTC AAGAATCGAA GCTAGTCAGC GCCGGAGTCA CCTATCCATG A
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| Protein sequence | MIDKRIASCR DAVADIFDGA TVMIGGFGEA GSPIELIHAL IDHGARNLTV INNNTGSGHV
GLAALIENGQ VGKMICSFPR TANSTVFPDL YRAGKIELEL VPQGTLAERI RAGGAGIPAF
YTATSVGTPL ADGKKHEMFD GQEFVQERGL TADFALIKSL NADRYGNLIY NKTARNFAPI
MAMAAKCTVV QTQVFVEAGD IDPEVVVTPG IFVNRIVTVE NPAQESKLVS AGVTYP
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