| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3620 |
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| Symbol | |
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| ID | 5611830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4407354 |
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| End bp | 4408976 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934573 |
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| Product | GAF containing protein |
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| Protein accession | YP_001475352 |
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| Protein GI | 157376752 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAC TCAGTAATAA ACAGATTGCA GAGCGGTTAC AGCATCTTAC AACCTTAAGT
ATCGCCCTCA ATGACATCAA GAATATCGAG GTCCTGCTGG AACGCATCTT ACAGACGGCA
AAAAATATCA CCCATGCCGA CGGAGGTACT CTATACCGCG TCAGTGCGGA TAAAAAATAT
CTGGAGTTCG ATATCCTTTT CAACGACTCT CTGGATCTTC ACTTTGGCGG AACCCTGGAA
AAGTCTGAAC AGATGAGATC TATCCCGCTA TCTCTGGACA ACGCAGAGCC GAACTTAGAA
GCCGTTGTCG CCTACGCCGC AAACCGCAAA GAGTCGGTCA ATATCGAACA TGTGTACGAT
ACGCCCCTGT TTAATTTTTT AGGAATGCGC AAATTCGATG AATTCTATGG TTATCACTGC
CAGTCCCTGC TAACCGTACC CATGTTGGAC CATAACTCAG AGTTAGTTGG CGTACTGCAG
CTGGTGAACT CCAAGGCACC TTTCTCTCAT CAGGTTCAAC CATTCTCAAT GACAGACCAG
GTGTTTATCG AGGCACTCAC CTCTCAGGCC GCGATTGCCA TCACCAATCA AGAGCTCATA
TTACAGCTGG AGGATCTGCT CGAATCTCTG GTGAATTTAA TCAACATAGG CATCGATGAA
AAGTCACCGA ATACCGGCAG ACATTGTCAG CAGGTGCCTA AATTAACCAT GATGTTGGCC
GATGCTGCAC AGAAGACAGA TGAAGGAGCA TTAAAAGATT TTGCCATGTC GATGAGTGAA
CGATATGAGC TCTGGTTAGC CGGTATGCTG CATGACTGCG GCAAGATAAC GACGCCGGTT
CATGTCATCG AAAAAGCGAC TAAGTTACAG ACTATCTTCG ACCGTATTCA CCTGATCGAT
GCCCGCTTCG AGATCCTCAG AAGGGATGTT GAAATTCACT ATCTGAAACA GCAGGCAGCC
CAAGGGCCAT CGAACCGGCT ATCCCGAGAG CTCGAATGTA AACTCGAACG ATTTGAAGAT
GATCGCACCT TTCTGGCTTA TGCCAATATC GGCTCTGAGC GTATGAAGGA TGAAGATCTG
CAGCGCGTCG CCTCCATCGC TAATTACACC TGGGTAGATC AACAGGGCAA CACGCAAACG
CTACTCAATG AGGAGGAGGT TGAAAACCTG ATGATCCCGG CCGGCACCCT GACCAATGAA
GAACGAAAGA TTATTAACAA CCACATCTCA CTCACCATAC GTATGCTCGA AACCTTGCCC
TGGCCGAAAC ACCTGCAGCA TATCCCTGAA TTTGCAGGCG GGCACCATGA GCGGATGGAC
GGAAAAGGTT ACCCCAGAGG CCTGCGCGGT GAAGAGATGT CGGTACAGGC AAGAATAATG
GCAATCGCCG ATATCTTTGA AGCCTTAACA GCCAAGGACC GCCCCTACAA GACAGGGAAA
ACACTCTCTG AATCCTTGAG AATTCTGGGA AAATTTAGTC TCAATGGACA CATTGACCCC
GAGCTGTTCC ATATTTTTGT AAAACAGAAA GTGTATCTGG AGTACGCCAA TCAATTTATG
GATAGTGCAC AAATTGATGA GGTCGATGAA ACACAGATCC CCGGTTACTT AAAGCCTCAA
TAA
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| Protein sequence | MSELSNKQIA ERLQHLTTLS IALNDIKNIE VLLERILQTA KNITHADGGT LYRVSADKKY
LEFDILFNDS LDLHFGGTLE KSEQMRSIPL SLDNAEPNLE AVVAYAANRK ESVNIEHVYD
TPLFNFLGMR KFDEFYGYHC QSLLTVPMLD HNSELVGVLQ LVNSKAPFSH QVQPFSMTDQ
VFIEALTSQA AIAITNQELI LQLEDLLESL VNLINIGIDE KSPNTGRHCQ QVPKLTMMLA
DAAQKTDEGA LKDFAMSMSE RYELWLAGML HDCGKITTPV HVIEKATKLQ TIFDRIHLID
ARFEILRRDV EIHYLKQQAA QGPSNRLSRE LECKLERFED DRTFLAYANI GSERMKDEDL
QRVASIANYT WVDQQGNTQT LLNEEEVENL MIPAGTLTNE ERKIINNHIS LTIRMLETLP
WPKHLQHIPE FAGGHHERMD GKGYPRGLRG EEMSVQARIM AIADIFEALT AKDRPYKTGK
TLSESLRILG KFSLNGHIDP ELFHIFVKQK VYLEYANQFM DSAQIDEVDE TQIPGYLKPQ
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