| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3613 |
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| Symbol | |
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| ID | 5611755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4400419 |
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| End bp | 4401018 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934566 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001475345 |
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| Protein GI | 157376745 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTC TTATAATCGG TGCGAGCGGC ACCATAGGTA AAGCGGTATA TGAGCGCCTG
TCCGGTGATA ATGAACTGGT TACGGCTAAC TATAACGATG GTGATGTCAG GGTCGATCTC
GGTGATAAAG ATTCGATTAA AAAGATGTTT GAGCAGGTTG GTCAGGTGGA TGCCCTGGTG
TCTGCCGCTG GTCTGGCAAA CTTCGTTCCT CTGGATGCAC ACAGTGACCA AGACTTTGAG
CTGGCACTGA ACAATAAGCT GATGGGGCAG GTTAATCTAT TGAGAGTCGG GCGTGATCAC
ATCAATGATG GTGGTTCAAT CACCCTGACT TCAGGCGTCC TTTCTCGTCA ACCTATGCCG
GGTAGTGCAT CGATCAGCAT GGCTAACGGT GCGTTGGAAA GCTTTGTTAA GGCGGCGGCA
CTGGAGCTTG AACAGCTAAG ACTGAATGTC ATTGCACCGG CTTTTGTTAA AGAGACCATG
GTGATGATGG GCATGGATCC CGATTGGGGG ATTTCGGCTG CCGATACGGC AAGAGTCTAC
GAACTGGCTG TTAAGGGGGA GATGCATGGC CAGACTATGG ATGTTGCACA GCATCAATAA
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| Protein sequence | MKILIIGASG TIGKAVYERL SGDNELVTAN YNDGDVRVDL GDKDSIKKMF EQVGQVDALV
SAAGLANFVP LDAHSDQDFE LALNNKLMGQ VNLLRVGRDH INDGGSITLT SGVLSRQPMP
GSASISMANG ALESFVKAAA LELEQLRLNV IAPAFVKETM VMMGMDPDWG ISAADTARVY
ELAVKGEMHG QTMDVAQHQ
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