| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3594 |
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| Symbol | |
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| ID | 5613426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4381451 |
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| End bp | 4382275 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934547 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001475326 |
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| Protein GI | 157376726 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGCC TACTTTTTAA GTTTCTGTTG CCACTTTTGT TGCTCCTCCC TCATTTCGCC
GTTGCGGAAA GCAGACCCTT AAGGATCCTT TCTCACGATC GTCCCCCTTT TCATTTTGCT
GACAGCCAGG GCGAGGTTGT GGGCATTTGC GTCGACATTA TCGATATTAT CTTCGATGAG
ATGGAGCTTG AGTATGAGGT GATCGATCTT AAGTGGGCCA GGGTTTGGTA TAAAATTGAA
CATGGAGAGG GTGAGGCGGC ATTTACCACA TCCAGAAAGA AGCCGAGGGA GCCCTATCTC
TATTATCCGG AGACAAATAT GTGGCGATCA GAATTTGCTT TCTTCGTACA AAAAGCGAAT
AAAGCTTTGG CCCCGAACGG CAGCTATGCT GAGGTGGCAA GATCCGGTGG TAAGGTTGGT
GTTTGGCGGG GGGCATCCTA TGATGATGTT TTTTGGAAAA CCTTCCCCTA CAAAGACGGT
ACGACAACAT ACTCTCCAAA CCTTAAAAAA CATGACGTGT ACAACAAGCA GTTGTTTATT
GTTAAGGGCC CGAGTCATGC GGCAAAAATG CTGGGACGTG GAAGAGTCAC CTTCTTCCTT
GAAGACCGAA TTACCGGGCA ATATTTAGTG AATAACAATA AGCTGGAAGG CAGCGTCGTT
GCCTATGAAC AGGCGGTTTT CGCTAAAGGT TATCCTATGC CGTTTATAAA AAATTCCGAT
TATCCCGATC TGAAGCAGAT TAGCGAAGAG TTTGAGAGGC GGTTGATCAT ATTGAAAAAT
GATGGCCGTT ATGACGCTAT TCTGAAGCGG TGGCTTAATC AGTAG
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| Protein sequence | MMRLLFKFLL PLLLLLPHFA VAESRPLRIL SHDRPPFHFA DSQGEVVGIC VDIIDIIFDE
MELEYEVIDL KWARVWYKIE HGEGEAAFTT SRKKPREPYL YYPETNMWRS EFAFFVQKAN
KALAPNGSYA EVARSGGKVG VWRGASYDDV FWKTFPYKDG TTTYSPNLKK HDVYNKQLFI
VKGPSHAAKM LGRGRVTFFL EDRITGQYLV NNNKLEGSVV AYEQAVFAKG YPMPFIKNSD
YPDLKQISEE FERRLIILKN DGRYDAILKR WLNQ
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