| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3583 |
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| Symbol | |
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| ID | 5614010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4366328 |
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| End bp | 4368544 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934536 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001475315 |
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| Protein GI | 157376715 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG1301] Na+/H+-dicarboxylate symporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCATG GCGACATAAA TTTACACGAC TCAATTGGAA TGAAATCTGT GTTTAAAAAA
ATGCTCTCTA TGACCAGCTC CAGCCAGATG TTGGTAGCGA TGTTTCTCGG TTTTGCAATT
GGCATATTCT TCGGTGAGTC TGTTGGCTGG CTTAGATCCA TAGGTACCAG TGTGATCTTA
TTGATGCAGA TGACGGTTCT CCCCTATATC GTGGTCTCAC TGGTGGGCGG TATTGGTAAA
CTACAAAAGA GCACTGCCAT GCTGATCTTC AGCAGAGCCG GCCTCATCAT GCTACTGCTA
TGGTTAATCG GGCTTATCAC TGTCGCCTTA ATGCCACTGT CATTCCCCTT CGTAGAATCT
GCCTCTTTCT TCAGCACCAG TACCATAGAG CCGGTCGCGG CCATCGATTA CTTCAAACTC
TATATCCCCT CTAACCCGTT CGAATCGATG GCTGCAGGTT ATGTGCCCGC TATGGTGGTA
TTCAGCATCG CCATGGGACT GGCCCTTATC GGCATGGAGG GGGACCACAA ACAGCAGATT
CTCACTTTTA TGCACACCAC CAGTGAGGTC TTTTCTCGTA TCACTCAGGG CCTGGTAAAA
GTACTGCCTA TCGGCATCTT CGCTATGTCG GCATCTGCAG CGGGTACCAT GGGGGTCGAT
GAATTTGCCA GCATGCAGGT CTACCTGATC AGCTATTTTG TACTCTGTCT GCTGCTCACC
TTCTGGATTC TGCCCTGGAT TATCGCCTCT ATCACCCCCA TCACCTTCGC GCAGGCATTG
AGGGTCTCCA AGGCCAGTTT AATCACCGCC TTTGCCACCG GTAACATCTT TATTGTGATC
CCCGTGATTG TCGAAGAGTG TAAGCAGATC ATGCGCGAAC ACGATAATCT CAGTGAAGAT
TGCGCGACAC TCATCGAAAT CTTAGTCCCT ATCGCCTTTA CCTTTCCCAA CATTGGTAAG
CTCACCGTTA TCTTGTTTGT CTTCTTTGCG GGCTGGTTTA ATGGCACCCC GATCGACTTA
ACCAGTATCC CTTCGCTATC AGTCAGCGGT CTGCTGTCAC TGTTTGGCAG TGTCTATGTT
GCCATACCGT TTATGCTGGA TCTGGTTCAT CTCCCCTCGG ATCTGTTCCA GTTATTCGTG
ATGGCAGGCT TTATCACGGG GAAATTCGGC TCCATTACCG CTGTGATGAA CCTGTTTGCC
CTGACCCTGT TAACTGCCGC TCTGTTTCAA AAGAGCCTCA GACTCAGACC ACCACAACTG
ATAAAGATGG GGCTGGGTAT CGTCAGCGGG GTCTTGCTGA CACTGGTTGT CTGTCGTGTT
GGCATGGGCG TGTTTATCAG CAGTCCGGCA ATCACCAGTG AAGTGATTGC CAATATGCAG
GTGGCCGATA AAGTACCGAC TAAGGTAAAG AAGCAGTTTC CGGTCTTAGG TCAAACCCCC
TCCTCCCCTG TCGCCGATAT ACAAGCCATT CGCACTCGGG GAATATTAAG AGTCGGCTAT
ACCCCCAGTA ACGTCCCCTT CAGCTATTAC AATAATGCCG GTCAATTAGT TGGATTCGAT
AGTGCCATGG CCACTAAGCT GGCCGAAGAC TTAGATGTCG AGGTAGAGTT TATCCCGTTT
CGCAAGGCTG AATTAGCCCG CTCTCTTAAG GCTGGTTTTT TTGATATAGC CATGTCCGGG
CTGGCCATGG ATATCAGACA GATGGACCAA CTAAGCTACT GCGAACCAGT ACTGGAGCTT
AACCTAGCCA TCGCCACTAA AGATCACTTA GTGAACAGCT TTAAAAGCAG CCAGAGCATC
TTAGAGATGG AGCAGGTCAC CATTGCCTAC GCCGAACATG GCGATGCCAT CGAGGATGTT
GCCGCAAACT ACCCTAATAT TGAGTTTGTT AAAGTTGAGG GATATAAAAA CTTCTTCAGA
CAAAAAGATG ATAAATACGA TGCCATGGTT ATCAGCGCAC AGGCAGGCTC AGCCTGGACC
CTGTTCTTCC CCGGATATGG CATAGCCCTG CTCGAAAGCA AGTCTCGTTA CCCGGTTGCC
TACGCTGTGG CACAGAACAA TCAATCCTTG CTCAATTATG TCAACAACTG GCAACGCCTG
CGCAAGGTCG ATGGCCACCA GGACCAATTC TATAACTATT GGATGCTGGG TAAGGGTGCC
ACCGAACCGC AACCTCGCTG GTCAATTATC CGCGATGTTT TACATTGGGT AGATTGA
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| Protein sequence | MKHGDINLHD SIGMKSVFKK MLSMTSSSQM LVAMFLGFAI GIFFGESVGW LRSIGTSVIL
LMQMTVLPYI VVSLVGGIGK LQKSTAMLIF SRAGLIMLLL WLIGLITVAL MPLSFPFVES
ASFFSTSTIE PVAAIDYFKL YIPSNPFESM AAGYVPAMVV FSIAMGLALI GMEGDHKQQI
LTFMHTTSEV FSRITQGLVK VLPIGIFAMS ASAAGTMGVD EFASMQVYLI SYFVLCLLLT
FWILPWIIAS ITPITFAQAL RVSKASLITA FATGNIFIVI PVIVEECKQI MREHDNLSED
CATLIEILVP IAFTFPNIGK LTVILFVFFA GWFNGTPIDL TSIPSLSVSG LLSLFGSVYV
AIPFMLDLVH LPSDLFQLFV MAGFITGKFG SITAVMNLFA LTLLTAALFQ KSLRLRPPQL
IKMGLGIVSG VLLTLVVCRV GMGVFISSPA ITSEVIANMQ VADKVPTKVK KQFPVLGQTP
SSPVADIQAI RTRGILRVGY TPSNVPFSYY NNAGQLVGFD SAMATKLAED LDVEVEFIPF
RKAELARSLK AGFFDIAMSG LAMDIRQMDQ LSYCEPVLEL NLAIATKDHL VNSFKSSQSI
LEMEQVTIAY AEHGDAIEDV AANYPNIEFV KVEGYKNFFR QKDDKYDAMV ISAQAGSAWT
LFFPGYGIAL LESKSRYPVA YAVAQNNQSL LNYVNNWQRL RKVDGHQDQF YNYWMLGKGA
TEPQPRWSII RDVLHWVD
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