Gene Ssed_3576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3576 
Symbol 
ID5613574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4358395 
End bp4359324 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content52% 
IMG OID640934529 
Productcarbonate dehydratase 
Protein accessionYP_001475308 
Protein GI157376708 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAGCA ATAAGCTGTT CGATGGCATC GTAATATTTA CTCAGGTGGT TAAATCCGGT 
GGATTTTCTG CGGCCGCCGA GTCCATGGGA CACTCGAGCT CCTATGTGAG CAAAGAGATC
AATAAGCTGG AGGCTCGTCT TGGAGTGCGC CTGCTTAACA GAACCACACG CTCTATCGGC
CTCACGCCCG AAGGCGAAGC CTATTATCAG CAGTGCCAAC AGCTGATGGT AGATGCAGAG
CAAGCGGTGG AGCTTATCAC CCAACATGAT GTCGACCCCA AGGGCAGACT CAAGATCAGC
AGTCCCATTG GGTTTGCCAA CAGCTATCTG CAGCCAATCC TGTCTGAATA TATGCAGCGT
TACCCTAACG TGAGTTTAGA ACTGGATCTC AACGACAGAC GAGTCGATGT GGTGGCTGAA
GGGTATGATT TGGCGATAAG GGCCGCACTT CAATTAGAGG AGTCCAGCCT GATCTGTCGC
AAAATATTTA GCTGTAAAGG GTATACCGTA GCCAGTAAAG CGTACATATC CAGACATGGG
CGTCCCCACC ATCCTCAGGA GCTAAGCCGC CATCACTGCC TATGCTATTC CAACCACAAG
ACGCCGGGTC GCTGGCAGTA TAAGGACAGC GAGGGAGATC CGATACAGGT CGATGTTAGG
CAAAAAGTGC TCAGTAATAA TGCAGAAATA CAGCTGGCAC TAACACTAAG CGGGCATGGG
ATCTGCCGCT TACCTAAGTT CTATATGACC GATGCCTTAG CGTCAGGGCA ACTCGAGATC
CTGTTTCCCG CTCTGCCCGC TCCGGAAATC GATGTCTATG TGGTCTATCC GAGCCGCAAG
CACCTGTCCC CTAAGGTGAG GGCCTTTATC GACTTAGTCG TGGAAAAAAT TCCGCCGACC
GTGCTCGCCG AAGACGCTTC AGAGAAATAA
 
Protein sequence
MTSNKLFDGI VIFTQVVKSG GFSAAAESMG HSSSYVSKEI NKLEARLGVR LLNRTTRSIG 
LTPEGEAYYQ QCQQLMVDAE QAVELITQHD VDPKGRLKIS SPIGFANSYL QPILSEYMQR
YPNVSLELDL NDRRVDVVAE GYDLAIRAAL QLEESSLICR KIFSCKGYTV ASKAYISRHG
RPHHPQELSR HHCLCYSNHK TPGRWQYKDS EGDPIQVDVR QKVLSNNAEI QLALTLSGHG
ICRLPKFYMT DALASGQLEI LFPALPAPEI DVYVVYPSRK HLSPKVRAFI DLVVEKIPPT
VLAEDASEK