| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3575 |
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| Symbol | |
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| ID | 5613573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4357052 |
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| End bp | 4358293 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934528 |
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| Product | Bcr/CflA subfamily drug resistance transporter |
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| Protein accession | YP_001475307 |
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| Protein GI | 157376707 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAACA GAGCCGTGTC TTTTATCGTT ATCACCGCAT TGGTGTTCGC CCTGTCTCCG
TTAGCCATAG ATATGTATCT GCCGGCTCTG CCCGAGATGG CCAAGCACCT GAATGCAACT
CACAGTCAGA TGGAGATGTC GGTAGCGGTA TTTCTATTGG CCTTCGCAAT CGCACAGCCC
CTCTTCGGTC TGCTGGCCGA CAGATATCAC AAGTTAAACC TGTTACTGAC AGGCTTGGTA
ATTTTTACCC TTTCGACTCT GGCTATTCCT ATGGTGGATT CCGCGACGGG CCTATACCTT
GCGCGCATAT TTCAGGCCAT CGGCGGGGCA AGCTCAGTGG TCTGCTTTGC CATGATCCAG
CAGCAATATG ATCTGCAAAA GGGCGCCAGG GTGCTCACCT ATGTGATGGC TGCCGTGGTG
GTGGCTCCTC TGTTGGCTCC CATGGTCGGC GGGCAAATTT TAAAATATGC GAGCTGGCAA
TGGATCTTCT ATACCTTAGC CGGGATAGCT ATCTTTGCCT TCGTGGCAAG CCTGTTAACC
CATGCTCAGG CCGATAAGTC TGTGCAGGGA GAAGAGAAGA CAGAGCAGGC TAACCAGAGT
CGCCGTGCCG CTTCGATATC GGATTTTGTG CAGATATTTA AACAACCGCT GCCACTGGCT
TACATCCTGG TTGGAAGCTT TGGTTTTGCG GGACTGTTTT CATTCGTGGC CGGCTCCCCC
TATGTCTATA TGAACTACTT TTCATTGAGT CCCGAGCACT ATAGCTACCT GCTTGGGCTA
AATGCTTTGG GCATGATTAT CGGCAGTCTG TTGAGTGTGA AGCTGCTGGG GCATATCAGC
CCCAAGGTTA AGGCCGTTAT CTCGGGTACC TTGTTGGGCC CGCTGAGTCT GCTGTTTTTC
ATGCTGGCAC AGATTGAAGT CCCCTTGATG GCTATCGTCG CGACAGTATT TATATTTAAC
CTGCTATTGG GACTGATATC GGCGAACGCC ATTGCGGCTG CCATGTCATT TTTTCCGGCT
CAGGGTGGGG CGATATCGGG CGTGTTTGGC CTGAGTCAGT TTGCCTTAGG CGCCCTGTTC
AGCGCTGCGA TTAGTCTGTC AGACGCGCAG TCGCCGGTGG CTATGCTGAC CTTTATGGGG
CTGGCTTGTG CCTGCGCCGC CATCTTCAGT ACCTACATTT ACACTAAGAG CAACGCTGAT
GGTGAACAGA GTAGTGAAGA GATCAGGATG CAGGTGCAGT AA
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| Protein sequence | MYNRAVSFIV ITALVFALSP LAIDMYLPAL PEMAKHLNAT HSQMEMSVAV FLLAFAIAQP
LFGLLADRYH KLNLLLTGLV IFTLSTLAIP MVDSATGLYL ARIFQAIGGA SSVVCFAMIQ
QQYDLQKGAR VLTYVMAAVV VAPLLAPMVG GQILKYASWQ WIFYTLAGIA IFAFVASLLT
HAQADKSVQG EEKTEQANQS RRAASISDFV QIFKQPLPLA YILVGSFGFA GLFSFVAGSP
YVYMNYFSLS PEHYSYLLGL NALGMIIGSL LSVKLLGHIS PKVKAVISGT LLGPLSLLFF
MLAQIEVPLM AIVATVFIFN LLLGLISANA IAAAMSFFPA QGGAISGVFG LSQFALGALF
SAAISLSDAQ SPVAMLTFMG LACACAAIFS TYIYTKSNAD GEQSSEEIRM QVQ
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