| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3550 |
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| Symbol | |
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| ID | 5611853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4324196 |
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| End bp | 4326328 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934503 |
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| Product | putative suppressor for copper-sensitivity B precursor |
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| Protein accession | YP_001475282 |
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| Protein GI | 157376682 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4232] Thiol:disulfide interchange protein
[COG4233] Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGATGA ACTTGAAGTA TCTAAAAAAC CTATTCGCGC TCTGTTTGAT TCTGTTATCG
AGCTCGGCGT TTGCGCAATC CACTCCCTGG ATTGAAAATC CTAACCATCC ACCGGTGAAA
CTCAGGTTGA TGTTGACCGG TGAGTTTGAC TCAGTCAATA AAACCTTACC TGCCGTGTTG
GAGGTTAAGT TAGAAGATGA TTGGAAAACC TATTGGCGTA GCCCGGGTGA GGGTGGCATA
GCACCTGGCA TTAAATGGGA TAAATCGACC AATTTAAAGA GTGTAGACTG GTCATGGCCG
GTACCTGAGC ATTTCTCGTT GATGGGGCTG CAAACCTGGG GCTATAAGCA TCATGTAAGC
TTTCCACTGC TGTTGACCGT AAATGACAGT GATGATGTCG CTCAATTGAG AGGCAAGGTC
ACCCTGTCAT CGTGCACCAC CATCTGTGTG CTTACCGATT ATGAGGTATC ACTGGATGTG
ATTCCCAGTG AGCTGAGGGC CGACAGTGAG GCGATGTTTA CCTATAACAA AGCCGTGTCT
AAGGTGCCGC AGAAGGTCGA AAATGGTGTC GACTCACCGA TTTTGATTGG CTGGGACAGC
GGTAAGAGTA AGTTGGTGGT TGAGCTTGAT GCGGGTCAAT GGCGACAGCC TCAACTCTTG
ATCGATGGCG AGCCCGATAC GGTGTTCACC CTTACATCTC TTAAAAAGAA AGAGAGTGAC
AGTGGGCCTG GTAAGCTTAT TGCCACCTTC GATGGCAAGA GCTGGTTAGG GGCTCCGGAG
GTGCTTGGCA AAACGCTCAA TGTCACGGTC GTCGATAGTG AGCAGGCTCT GGAGTACTCA
GATGAAGTGA TACCGACTCA AGTTATTGAG GATGATATCT CGCTTATTAA GGTGTTACTT
ATCGCGCTGC TCGGTGGCCT GATACTGAAT GTTATGCCCT GTGTACTGCC TGTACTCGGC
ATGAAATTGA GCACGGTAAT CGCCGCCCCC GAGCTAAAGC GCAACGAGAT CCGTCAGCAA
TTTATCGCAT CGGCATTGGG TATTTTAGTC TCGTTCTGGC TGCTGGCCGG ATTCATCTTA
GTGCTTAAAC TGACCGGGCA GGCGATTGGT TGGGGCGTTC AGTTCCAGAA CCCTTGGTTT
ATCGGTTTTA TGGCAATCGT GACCTCTATT TTTGCCCTCA ATATGCTCGG CACATTTGAG
ATCAACCTGC CTTCCAGCCT ACAGACCAAG CTGGCGACCA CTGGCGGTAA CAATAACCGG
GGCCATTTCC TGCAGGGAAT GTTTGCTACC CTGTTGGCGA CGCCCTGTAG TGCGCCTTTC
TTAGGGACTG CGGTGGCATT CGCCTTGGGT GCCGATACTC TCAGCCTGTT TGTTATCTTC
ACCGCACTCG CCGTCGGGAT GGCGTTGCCC TGGCTGCTGG TAGCTCTGTT TCCGCAGGTG
GCGAATTACT TCCCTAAACC CGGTCGCTGG ATGAATATCG TTAAGGTGTT CTTCTCGGTC
ATGTTGTTGA TCACCAGCCT GTGGTTAATC AGCCTGTTAA GCAATTTCGT TGCTTCGAGC
ATTCTGTGGT TATTCGCCGG GTTATTGGTG TTGATGTTTT TTGTCTTTAT GGCAAAGAAA
CATGGCAGTG CTGCCGTGAT CGCCAGCATT AGTCTGGGCA TATTATTCAG TGCCGTTACC
GCCTTTATGA CCTCTGAGCA GTGGGCCAGA CCTCTGCCCA CAGACTTAGC CTGGACGCCT
TTGAGTGAAG TCGAGATCAG TCAACAGGTC GCAAACGGTA AGACTGTGTT TGTCGATGTG
ACGGCCGATT GGTGCATCAC CTGTAAGGCC AATAAGGCGG GAGTGATACT GCAAGACCCG
GTTTATAGCG CACTCAAGCA AGCGGATATG GTGATAATGA AAGGGGATTG GACTAAGCCA
TCGGCGCCTA TCACTAAGTA CCTGCAGAGT CATAATCGCT TCGGTGTGCC TTTTAATGTG
GTCTATGGCC CCAACGCACC CCAGGGGATA GCGTTACCTG AAATTTTGAG TACCAATGAG
GTGCTATCGG CGATTGAACG TGCCTCTTCG AGGGCGATGG CGGCGACGCC CGCTGTGGGT
GACACGGACT CCGAACAGTT CCGTTATGAC TAG
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| Protein sequence | MEMNLKYLKN LFALCLILLS SSAFAQSTPW IENPNHPPVK LRLMLTGEFD SVNKTLPAVL
EVKLEDDWKT YWRSPGEGGI APGIKWDKST NLKSVDWSWP VPEHFSLMGL QTWGYKHHVS
FPLLLTVNDS DDVAQLRGKV TLSSCTTICV LTDYEVSLDV IPSELRADSE AMFTYNKAVS
KVPQKVENGV DSPILIGWDS GKSKLVVELD AGQWRQPQLL IDGEPDTVFT LTSLKKKESD
SGPGKLIATF DGKSWLGAPE VLGKTLNVTV VDSEQALEYS DEVIPTQVIE DDISLIKVLL
IALLGGLILN VMPCVLPVLG MKLSTVIAAP ELKRNEIRQQ FIASALGILV SFWLLAGFIL
VLKLTGQAIG WGVQFQNPWF IGFMAIVTSI FALNMLGTFE INLPSSLQTK LATTGGNNNR
GHFLQGMFAT LLATPCSAPF LGTAVAFALG ADTLSLFVIF TALAVGMALP WLLVALFPQV
ANYFPKPGRW MNIVKVFFSV MLLITSLWLI SLLSNFVASS ILWLFAGLLV LMFFVFMAKK
HGSAAVIASI SLGILFSAVT AFMTSEQWAR PLPTDLAWTP LSEVEISQQV ANGKTVFVDV
TADWCITCKA NKAGVILQDP VYSALKQADM VIMKGDWTKP SAPITKYLQS HNRFGVPFNV
VYGPNAPQGI ALPEILSTNE VLSAIERASS RAMAATPAVG DTDSEQFRYD
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