| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3508 |
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| Symbol | |
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| ID | 5612607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4274719 |
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| End bp | 4275264 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934461 |
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| Product | nodulation protein L |
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| Protein accession | YP_001475240 |
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| Protein GI | 157376640 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0110] Acetyltransferase (isoleucine patch superfamily) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0002287 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCAAG AGCTTAGCAA CTATCAGAAA ATGATTTCCG GTCAGGAATA TAACTATTTA
GATGCAGAGC TCATGGAGCT GAGAAAGCAA CAACAGGTGC TCAATCGACA GGCTAACCTC
TCCTTCGATT ATCAGCATGA TGAAAATTTG CTACCGCACA AGTCTCCTGA CGCCAACATA
GTCCTGCCGT TTTATATCAG CTACGGTTTA CACATTCACC TTGGCAGTAG GGTATACATC
AATAGCAATG TCACCCTGCA GGATAATGCT CCAATCCATA TCGGAGAGCA CACTATGGTT
GGACCCAATG CACAATTTTA TACCGCCAAC CACCCTCTCG AAGCCGAAAA GCGATGCCAA
GGCTATGAGG TTGCCAAAGC CATAACCATA GGCAAGCGCG TCTGGATTGG CGGTGGTGCA
ATCATACTCC CGGGCATTAC AGTCGGAGAT GAAGCCGTAA TAGGGGCGGG CTCGGTAGTG
ACCAAAGATG TTCAGGCCAA GACTCTGGTA GCAGGGAACC CTGCACGAAT AATCAAAGCG
TTATAG
|
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| Protein sequence | MNQELSNYQK MISGQEYNYL DAELMELRKQ QQVLNRQANL SFDYQHDENL LPHKSPDANI
VLPFYISYGL HIHLGSRVYI NSNVTLQDNA PIHIGEHTMV GPNAQFYTAN HPLEAEKRCQ
GYEVAKAITI GKRVWIGGGA IILPGITVGD EAVIGAGSVV TKDVQAKTLV AGNPARIIKA
L
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