| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3454 |
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| Symbol | |
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| ID | 5613557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4204635 |
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| End bp | 4205630 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934394 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475186 |
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| Protein GI | 157376586 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCG CGCATAGTAG GCTGCATCGT CTCGATTTGG TCAGGTTGCG AGTGCAGCTC
ATATTGGAAC ATATCGGAAT GAAAATCATG CATAACAGGT TGCATCGTCT TGATCTTAAT
CTACTGAAAT TGTTCAGTGC CCTCTATGTT CACCGAAATG TTTCCGTGGC GGCGGAGTCG
ATGAACCTGA GTCAGTCGGC GTTCAGTCAT GCCCTGGCCA GGTTGCGAGT GCAACTCGAT
GATGAGCTGT TTATCCGTAG TCGGGCACAG ATGATACCGA CTCGCTATGC CGACAGCATT
CATGAGCCGG TAGCTGAGGT GCTTTCGACC TTAGGGAGCT GCTTCGCCCC GCAGACTCAT
TTCATTCCCC ACGAGAGCCG GCATGAATTT AATTTCGCCG TCACCGATTT TACAGCGCTG
TTGATGATGC CCCGTCTGAT GGCGCATCTG GAACGGCATG CACCTCTGGT GCGCATCAAC
CTGACCTCCC GTAGTGAGAA ACTGCCTCTG GCCGCATTTG AGGCGGGAGA GCTGGACTTT
GCCTTGGGAT ATTCTCATTT TGATGAGGTA CAAACCCCAT TGATTAATCA ATGGATCTGG
TGGGAAGACT GTTACTGCAC GATAGCGAGC GATAAGCTTG AAAGAATGGA TCTGAAGACC
TTTCTCTCTC GTCGGCATAT TTTGGTCTCG CCCTGGGGGG AGAAGATCGG AGTGGTGGAT
GAGCAGTTGA GTAAGCAGGG GTTGCAGCGA GATATCGCCT TGCAGCTGCC CAATGTGATG
AATGCGCCAT TTGTGGTGGC CGGATCGGAG CTGCTGCTCA CCTTACCTAA ATTTGCGGCG
CAGGCACTGC AGGGAGCGTT GCCTGTCAAA CGGTTCGATG TTCCCGTAGA TATGCCTACC
TATCAACTGA AACTGTTTAC CTATAAGCCG AGTGAAAATA CACCTGAGAA TCTCTGGATG
AGAGAGCAGC TTCAATCCCT GTTTAAATCT GAATAG
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| Protein sequence | MNIAHSRLHR LDLVRLRVQL ILEHIGMKIM HNRLHRLDLN LLKLFSALYV HRNVSVAAES
MNLSQSAFSH ALARLRVQLD DELFIRSRAQ MIPTRYADSI HEPVAEVLST LGSCFAPQTH
FIPHESRHEF NFAVTDFTAL LMMPRLMAHL ERHAPLVRIN LTSRSEKLPL AAFEAGELDF
ALGYSHFDEV QTPLINQWIW WEDCYCTIAS DKLERMDLKT FLSRRHILVS PWGEKIGVVD
EQLSKQGLQR DIALQLPNVM NAPFVVAGSE LLLTLPKFAA QALQGALPVK RFDVPVDMPT
YQLKLFTYKP SENTPENLWM REQLQSLFKS E
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