| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3423 |
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| Symbol | |
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| ID | 5610722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4174505 |
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| End bp | 4175482 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640934363 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001475155 |
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| Protein GI | 157376555 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG ACATGGAAGT TATATTAGAT TCAGTTGTTC ATTTGACGGA ACAACGTCAG
CTAGAGTCAC TTACCGCCAG CCTTATCTCC ACCGTTAGAC AGTTTATCGC CCCCATAGAT
GTACAGATAC TCGATACCTC TCTATCAGAT GATGACAGGG AAGAGGTTAT TCTTCCCGAA
CATTTACTCA ATGATGCCGG TGGATTAAAG AAAAGCTTAG CTTGTTTTAC TCATTGTGTG
TCGATGCGTC AAACTTACTA CTGTCGCGAT ACTATTCCGG CACAAGTTGC CATACCTATC
ATTTTAAATA ACTGTATTGT TAAGGTGCTA TGGGTAAAAA TTACCTGTCT TTCCGATCAA
AATATTAATT TGTTAAATGG CTTCGCTAAG GTTTATGAAA ATTTTCTCAC CATCGTTATC
GAATGTGAAA CAGATGTGCT GACCGGCTTA CTGAATAGAA AGGCGTTCGA GAGCAGGTTG
AAGCTGGCGA GTGAAACCAG CTATCAAAAT TCCGGGCTCG ATGATCAGAG ATTGAGTTAT
TGGCTCTGTA TTTTTGATAT CGACAAGTTT AAATTGATCA ATGATACTTT CGGTCATCTC
TATGGCGATG AAATCCTGTT GGATTTAGTC ACGGTTATGC GAAACGTATT CAGTGAGAGT
GACGGAATGT TCAGATTTGG GGGCGACGAG TTTGTGCTCT TGATTGCTCC CGATACTAAA
CAGAGGGTGC GTGCTAAGTG CGAGCGATTC TGTAACGAGT TGTATGAGTT TCATGATCAA
AATATCCAGG TCACACTCTC TATGGGGATG ACTGAGGTAT TGCCTGGTGA GCAAGCCAGT
GGTTTATTGG AAAAGGCCGA TCAGGCTCTC TATTACGTCA AGGAAAATGG TCGTAACCGA
ATTGAGATAT TTGAAGAGCT GGTATCTCAG GAGTTAATTT CCCTTAAGAA GTTTGAGGAC
GATATCGAAA TCTTTTGA
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| Protein sequence | MSFDMEVILD SVVHLTEQRQ LESLTASLIS TVRQFIAPID VQILDTSLSD DDREEVILPE
HLLNDAGGLK KSLACFTHCV SMRQTYYCRD TIPAQVAIPI ILNNCIVKVL WVKITCLSDQ
NINLLNGFAK VYENFLTIVI ECETDVLTGL LNRKAFESRL KLASETSYQN SGLDDQRLSY
WLCIFDIDKF KLINDTFGHL YGDEILLDLV TVMRNVFSES DGMFRFGGDE FVLLIAPDTK
QRVRAKCERF CNELYEFHDQ NIQVTLSMGM TEVLPGEQAS GLLEKADQAL YYVKENGRNR
IEIFEELVSQ ELISLKKFED DIEIF
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