Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3379 |
Symbol | |
ID | 5609928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4116224 |
End bp | 4117060 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934317 |
Product | nucleoside-specific channel-forming protein, Tsx |
Protein accession | YP_001475111 |
Protein GI | 157376511 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3248] Nucleoside-binding outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000573921 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00247146 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAACG TTAAAACTTT AGCACTAGCA GCAGCAGCTG TAGCAGTAAT GTCTGCACCA ACTTTCGCTG CTGACCGTGG TGACGATATC CGCGCTGGCG ATTACAGCTG GATGCAGTTC AACGCAATGT ACGCGTTTGA CGAGCTTCCT TCTGCTGGTG AGAGTGGACA CGATTACCTG GAAATGGAAT TCGGCGGCCG CGCTGGTGTT GTTGACCTAT ACGGTTATGT CGATGTATTC AACTTAGCAT CTGGTGATTC AGGCGATAAG GCTGAAGGTT CTGGTGCAAG CAAGATGTTC ATGAAGTTTG CTCCACGCTT CTCTATCGAT GCAATCACAG GTATGGATCT TTCAGCTGGT CCAATCCAAG AAGTTTACAT CTCTACTCTA TTCAACTGGG GTGGCGGTGT TATCGGTGAA GATGTAAACA ATGTTGCCGT AGGTATCGGT GCTGATGTAA TGGTTCCATG GTTAGGTAAA ACTGGCATGA ACCTTTACGG TTTCTACGAC ATTAATGATA AAGATTGGAA CGGTTACCAA TTCTCTATGA ACTGGTTCAA GCCTTTCTAC TTCCTAGAAA ATGGCAGCTT CGTTTCTTTC CAGGGTTATG TTGATTACCA GTTTGGTGCT GATGACACTA AGGGTGACGA GTGGGTTCCT ATGACTTCTA GCGGTGGCGC TGCATACTTC GGTGTTCACT GGCATTCAGA CAACTACGCA CTGGGTTATG GCCTGAAGGG TTACAGCGAT GTATACCTTC TTGAAGATGG TGCTGGTAAA GTTGGTCTAG AAACTACAGG TTTCGCACAT TACCTGACTG CTACTTACAA GTTCTAA
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Protein sequence | MKNVKTLALA AAAVAVMSAP TFAADRGDDI RAGDYSWMQF NAMYAFDELP SAGESGHDYL EMEFGGRAGV VDLYGYVDVF NLASGDSGDK AEGSGASKMF MKFAPRFSID AITGMDLSAG PIQEVYISTL FNWGGGVIGE DVNNVAVGIG ADVMVPWLGK TGMNLYGFYD INDKDWNGYQ FSMNWFKPFY FLENGSFVSF QGYVDYQFGA DDTKGDEWVP MTSSGGAAYF GVHWHSDNYA LGYGLKGYSD VYLLEDGAGK VGLETTGFAH YLTATYKF
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