| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3370 |
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| Symbol | |
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| ID | 5609734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4103992 |
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| End bp | 4105365 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934308 |
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| Product | DNA repair protein RadA |
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| Protein accession | YP_001475102 |
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| Protein GI | 157376502 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1066] Predicted ATP-dependent serine protease |
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| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAAA TTAAAACAGC ATATGTGTGT AATGAATGTG GTCAGGACTT TCCCAGGTGG
CAAGGCCAAT GCAGTGCATG TCATGAATGG AATACCATCA CCGAAGTTCG CCTAGGTGCG
GTTAAGTCTG CCGGCGCTTC GGTGTCGGGT TATGCCGGTG CGGTTGGCGG TGGCTCAAAA
AAACTCAATG AAGTTAAGGA AGTTGAAGCC GAAAAGATGC TGACCGGCAT AGGTGAGCTG
GACCGCGTTC TGTGCGGCGG GTTAACTACC GGCTCGGTGA ATATTATCTC CGGCGACCCC
GGGGCGGGTA AGACCACCAT ACTGTCCGAT CTCGTCTCTC GCATGTCACA GTTGATGCCG
TCACTCTACT GTACAGCCGA AGAGTCGCTG TCACAGTTTA AAAACCGTGT GAACCGTCTT
AAGCTGAGCT GTAATGAAGA TAACCTGTAC CTGATGGCGG AAACGAGCGT CGAAGCCATC
ATTGCCGAAC TCGAGGCAAA GCAGGTTAAG TTTGCGGTGA TAGACTCAAT TCAGGCGGTC
GTCACCGACC TGGCTAATGG CAGCCCGGGT TCCCCTTCGC AAGTTAAAAG CAGCGCCCAG
TCACTGACGC AATACTGCAA GCAGAATAAC GTCACCATGT TCCTTGTGGC GCATGTGAAT
AAAAATAATG AAACCGCCGG CCCACAGACC TTGATTCATA TCGTCGACTG TCTTACCCAC
CTGGAGTGCA ACGACGGTCA GGTGCGTACC CTCAGAGCCA ATAAAAACCG TTTCGGGGAT
GTCGACACCG TCGGTATCTT CAAGATGACC GAGCGCGGCA TGCTCAGTGT CGATAACCCC
AGCGAAATTT TCCTCTCCGG CTCGACGACT CAGTCTCCGG GAGCGGCTAT CACCTGTATC
CGCAAAGGCA ACCGTAACCT GCTGCTTGAA ATTCAGTGCT TAACCACCGA AACCGAGGGG
GAGTTCCCCC AGCGCGTCTG TGTCGGGCTT AATATGAACC GTATTAAGAT GCTGACGGGG
ATCTTGCGTA AACACACCAA GACGAAGATT TTTCACGATA CCTATTTCAA CTTAGTCGGC
GGGCTCAAAA TCGATGAGTC AGAAACTTGT ATCGATCTGG CGTTGGTCAC AGCACTGCTA
AGCAGCCTAA ATGATTTCGT TGTCCCAAGA ACCACCTGCA TCATGGGGGA GCTGAGTCTG
AATGGTGATG TCCGCCCGAT AGATAGTGGC GTGCCGCGGG TGAAAGAGGC CGTTCAACAT
GGGTTCACCG AAGTGTTTAT CCCTTTCCGT AACTACCACA AGTCGATGGA AGGGCTAGGG
GCTAAGATCA ATCCGGTAAA GACTATCCAT GAGTTGCTTG AGTTAATAAA TTAA
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| Protein sequence | MAKIKTAYVC NECGQDFPRW QGQCSACHEW NTITEVRLGA VKSAGASVSG YAGAVGGGSK
KLNEVKEVEA EKMLTGIGEL DRVLCGGLTT GSVNIISGDP GAGKTTILSD LVSRMSQLMP
SLYCTAEESL SQFKNRVNRL KLSCNEDNLY LMAETSVEAI IAELEAKQVK FAVIDSIQAV
VTDLANGSPG SPSQVKSSAQ SLTQYCKQNN VTMFLVAHVN KNNETAGPQT LIHIVDCLTH
LECNDGQVRT LRANKNRFGD VDTVGIFKMT ERGMLSVDNP SEIFLSGSTT QSPGAAITCI
RKGNRNLLLE IQCLTTETEG EFPQRVCVGL NMNRIKMLTG ILRKHTKTKI FHDTYFNLVG
GLKIDESETC IDLALVTALL SSLNDFVVPR TTCIMGELSL NGDVRPIDSG VPRVKEAVQH
GFTEVFIPFR NYHKSMEGLG AKINPVKTIH ELLELIN
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