| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3336 |
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| Symbol | |
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| ID | 5609610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4054188 |
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| End bp | 4055477 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934274 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001475068 |
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| Protein GI | 157376468 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0132236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTG ACGCACTCGA ATTGAACCCC TCAATTCTTG AAGCCATCGA TGTCTGTGGC
TATCAACAAC TGACTCAGGT GCAATCTGAG GTTATTCCTG TTGCATTAAC GGGCGTGGAT
CTTATGGCTT GTGCCGAAAC AGGTACAGGC AAAACCGCAG CGTTTGCACT GCCTCTAATA
CAGAGGCTGA TCTTTGATGA GGTGAACTTA GGTTCGCTCA GGGGCCTGAT CTTGACACCG
ACTCGGGAGC TGGCGATACA GGTGGCCGAG AATATCTCTC GCTACTGTCA GTTTACAGCG
CTGAAAACCT TAGCGGTTTA TGGCGGTGCC AATATGAACC CTCAACGAAA AGCACTCAAT
GCCGGGGTTG ATATTTTAGT GGCCACACCT GGCCGATTAT TCGACTTTAT CGGCCAGCAT
GGATTAGACC TATCGGATGT GAAGACACTG GTCATCGATG AAGCCGATAG AATGCTGGAC
ATGGGGTTTG TCCGTGATAT CGAGCGAGTG AAAGCGCTTG TCGCAGCTGA GCACATTACG
CACTTTTTCT CAGCTACCTA TAGTGACGAT GTGAAGGCGC TGGCGCAGAA AATGTTGCAA
TCTCCCCAGT GGATAAATGT CGCTCAAAGC CGATCGGCAT CCAGTGTTGA ACAGGAGATA
TACCTTGTCG ATAAGCGCCG CAAGGCGGAG CTGTTATCTG AGTTAGTCGG TCGTAATAAT
TGGCAACAAG TATTGGTATT TGCCAGTAGT AAAGAGAGCG CTGAGCACCT GCAGAACGAG
TTAAAGCTCG ACGGGGTTAA GAGTGCGGTA TTCCACGGCG ATAAGACTCA GGGCGCTCGA
AATCGTGCCC TCGAAGAATT TAAAAATGGT ATGTTGAGAG TGCTGGTGGC CACCGATGTC
GCCGCAAGGG GGCTGGATAT TCAGGCCCTG CCTCTGGTTA TCAATCTGGA ACTTCCCTTC
GATGCCGAAG ACTATATCCA TCGTATCGGT CGAACAGGAA GAGCGGGTCT TAAGGGGCGG
GCCATTTCGT TTGTATGCCC ATCTGATGAG AAGATGCTTG AAGAGATTGA AACCTTAATT
GAGCTTAAGC TACCCCGTAC TGTACTTCCC GGGTATGAAC TCGGAACGCC ACTGCCTGCT
CGCTATAGAG AGACTCAAGA GTCGACCAAG AAGCGTGTAG AGAGACGCAA GGGTAAGCCC
AAGCATGGGA AGAGAGGAGC AAGCGGCGAT GATCGCGCAG ATAAAGGTAA GTCGAGTTAC
GCAAGCCGAA GAGCCGATAA GAAACGTTAA
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| Protein sequence | MKFDALELNP SILEAIDVCG YQQLTQVQSE VIPVALTGVD LMACAETGTG KTAAFALPLI
QRLIFDEVNL GSLRGLILTP TRELAIQVAE NISRYCQFTA LKTLAVYGGA NMNPQRKALN
AGVDILVATP GRLFDFIGQH GLDLSDVKTL VIDEADRMLD MGFVRDIERV KALVAAEHIT
HFFSATYSDD VKALAQKMLQ SPQWINVAQS RSASSVEQEI YLVDKRRKAE LLSELVGRNN
WQQVLVFASS KESAEHLQNE LKLDGVKSAV FHGDKTQGAR NRALEEFKNG MLRVLVATDV
AARGLDIQAL PLVINLELPF DAEDYIHRIG RTGRAGLKGR AISFVCPSDE KMLEEIETLI
ELKLPRTVLP GYELGTPLPA RYRETQESTK KRVERRKGKP KHGKRGASGD DRADKGKSSY
ASRRADKKR
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