| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3332 |
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| Symbol | |
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| ID | 5610279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4048697 |
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| End bp | 4049785 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934270 |
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| Product | TonB family protein |
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| Protein accession | YP_001475064 |
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| Protein GI | 157376464 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00224785 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCAT CAATTCGTCT TCGCCATCTG TTTGCAGCTG TTACGCTAAG TTGCCTGAGT
ATGAGCTGTT TCAGTGCTTT CGCCTCTGAA TTTTCACAAA GCTACACCGC CTACAAGCAA
GCCGTCGCAG AGAAAAACAG TGAACTGGCG CTCAAGTATG CAGGAGAGGC TTATGAGCTA
GGCTCAGTGC AGTTTGGGGC AAAAAGCCTG GATACGGCAA CCTTAGCGTT AAACTATGCC
ACAGCACTCG AAGTGCAAGA TCAAAAAGAG CAGGCGAATT CACTCTATCT GTTGGCACTT
GAAGTTTATC AATCGAGCCA TGGTGAAGAT GCTCTTGAGG TGTTAGACCC TCTTATCGGC
GCTGCGCAAA CGAGTTCAAA TCCTAAAACG GCCAGGTCTC TGTTTGAAGA TGCTATCGAT
ATCTCCTCCG ATGCAGAAAA CCGGATACTG CATGCCGATA CCCTCAGCGC TGCATTTACT
ACCCTCTCCA AAACCCGTCT CTATAACAGA AAAATTCGTA ACTACGCACT GGATGGTTAC
GAGATCTATA AAGAGGAGTT GCCACAAGAC TCGCTCACCA GAGTGAAAGC GGCATACATA
GCCGGCTCAA TTCATTTCGT CGAGAAGAAA AACAGCAGAG CGATCCCCCT GCTGAATGAG
GTGGTGAAAC AATTCTCAGC GCTCAATTAT ACCCACCCCT ACGAGTTGAA GGCTCACGCA
TATCTGGTGG AACTCTATGA GCGTGAGGGG GAGAGTGATA AGTCTACCGA GCACTGCATC
GCTATCGGTA GTATGCGTCC CTGGCTCGAT GATCAAGAGC AGGTGCCGCT GTATCGTCAA
CCCCCTGAAT ATCCTCTCTC ATATGTTAGG CGGGGCAAGA GTGGCTGGGC CGAAGTGTCA
TTTCTTGTCG ATGAATTGGG TTTTGTGAAG GAGCCTAAAA TACTCGACTC TGAAGGTGGG
AGTAAATTCA GTGATGAATC GATCAAAGCC TTAAAACAGT GGCGTTATGC GCCAAAGTTT
GTCGATGGCT CGCCCATTGC TGCAGAGACA AGAGTCAGAA TGGAGTTTAC CATCGAGCGA
AAAAGATAG
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| Protein sequence | MTSSIRLRHL FAAVTLSCLS MSCFSAFASE FSQSYTAYKQ AVAEKNSELA LKYAGEAYEL
GSVQFGAKSL DTATLALNYA TALEVQDQKE QANSLYLLAL EVYQSSHGED ALEVLDPLIG
AAQTSSNPKT ARSLFEDAID ISSDAENRIL HADTLSAAFT TLSKTRLYNR KIRNYALDGY
EIYKEELPQD SLTRVKAAYI AGSIHFVEKK NSRAIPLLNE VVKQFSALNY THPYELKAHA
YLVELYEREG ESDKSTEHCI AIGSMRPWLD DQEQVPLYRQ PPEYPLSYVR RGKSGWAEVS
FLVDELGFVK EPKILDSEGG SKFSDESIKA LKQWRYAPKF VDGSPIAAET RVRMEFTIER
KR
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