| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3315 |
|---|
| Symbol | |
|---|
| ID | 5614139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4030567 |
|---|
| End bp | 4031046 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640934253 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475047 |
|---|
| Protein GI | 157376447 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2020] Putative protein-S-isoprenylcysteine methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0211298 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGGT TTATGGAGAA AGATCTGAAA GGTGCCGGAG TTAAAATTCC CCCGCCGGTT
ATTTTTATCC TGTTTATGTT ATTGGCTCAT GCAAATGAAC TGTTATTTCC CATCGGGATA
ATCTTTGCGC CGGTGATAAC CTATATCGGC CTGGGCTTGG TGATGACCGG GCTTATTTTA
CTGCTCTCCT TGTTGCTACA GTTTAAGCGG GTAAAGACCT CAATAGAGCC TTGGCAGCCG
ACTTCATCAA TTATTAAGAC CGGGCTCTAT AAGTATTCAA GAAACCCCAT CTATCTGGCC
TTGTGTACCA TCCCAATCGG GTTAGGCCTC TACTTTAGTC ATATTTGGCT TATCACCAGT
GTGATCCCAT CTTGTATCGG TATCTATTAT GTGGCCATCA GGCCCGAAGA GGTCTATTTA
ACCCGTAAAT TTGGTGATGA GTATACTCGT TACCAGCAAC AGGTTCGCAG GTGGTTTTAA
|
|---|
| Protein sequence | MERFMEKDLK GAGVKIPPPV IFILFMLLAH ANELLFPIGI IFAPVITYIG LGLVMTGLIL
LLSLLLQFKR VKTSIEPWQP TSSIIKTGLY KYSRNPIYLA LCTIPIGLGL YFSHIWLITS
VIPSCIGIYY VAIRPEEVYL TRKFGDEYTR YQQQVRRWF
|
|---|
| |