| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3311 |
|---|
| Symbol | xni |
|---|
| ID | 5613570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4027213 |
|---|
| End bp | 4027980 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934249 |
|---|
| Product | exonuclease IX |
|---|
| Protein accession | YP_001475043 |
|---|
| Protein GI | 157376443 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00247146 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAT TTTTAATAAT TGATGGCATG AACCTGGTTC GCCGAATGCA TGCGGCACAA
CCCAATGAAA ACGACGTAAA TGGGCTCGAT ATTCGTGTAG GCTCAGCTTG CAAGAAGCTG
GTTAAATACC ATCAGCCAAC CCACGTTGCA GTCGTATGGG ATGGTGATGA TATTTCATGG
CGAAAACACC TCTTTGAGGA CTATAAAAAA GGCCGAAAGC CTATGCCGGA AGCCTTGTCA
AACACCCTAC CTGCCCTAAA GTCATACCTT GCAGAGCAAG GCGTTAATTC AATTGATGCG
GCATCAGAAG CCGATGATGT TATCGCGACC TTAGCGAGTA AATTGGTCGC CAATGGTGGC
AAGGCCATCA TAGTATCCAC CGATAAGGGA TTTACTCAAC TCAGTGATCC CTATATTCAG
AGGTGGGATC ATTTCAATCA GCATTACATG ACGATTGAAG AGAGAGAGGA GAAGTTAGGC
GTAGAGCATT CACAGTTTAT CGACTATCTT GCCTTAGCCG GTGATAGTGG AAATAAGATA
CCCGGGGTGC CCGGCATCGG CCCGAAATCA GCCATCGAGC TGTTAAGAAC ATTTCGTTCA
CTGGCCAATA TCTATGCGTC GCTGGATAAA ATTGGGGCCA AGCAAGCTAA AAAACTTGAA
GCGGGCAAAC AGATGGCAAG GTTGAGTTAT AAATTAGTTC AACTGCAGAC CGATATTCCG
CTGAATATAA ACCTGAGCCA GTTCAGGCTG CCTAATCCGA ATGCATAG
|
|---|
| Protein sequence | MNTFLIIDGM NLVRRMHAAQ PNENDVNGLD IRVGSACKKL VKYHQPTHVA VVWDGDDISW
RKHLFEDYKK GRKPMPEALS NTLPALKSYL AEQGVNSIDA ASEADDVIAT LASKLVANGG
KAIIVSTDKG FTQLSDPYIQ RWDHFNQHYM TIEEREEKLG VEHSQFIDYL ALAGDSGNKI
PGVPGIGPKS AIELLRTFRS LANIYASLDK IGAKQAKKLE AGKQMARLSY KLVQLQTDIP
LNINLSQFRL PNPNA
|
|---|
| |