Gene Ssed_3297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3297 
Symbol 
ID5612203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand- 
Start bp4007391 
End bp4007930 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content44% 
IMG OID640934235 
ProductYfaZ family protein 
Protein accessionYP_001475029 
Protein GI157376429 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.842985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones2 
Fosmid unclonability p-value0.0000000230689 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAACTTA AAATGTGGGG TTGCGCACTC CTTCTATCCA GTGTTTCCAT TACCGCTCAT 
GCCAATGATT TTAGTCTTGG CCTGAATGAT AATGTGATCT CCACCGATCT TATCTTCGAT 
CTTAACAAAC ACTCCAATGC CTCTGTGGGT TATATCTACT CTAACGATGG CGGCCACCTT 
GCATCCACAG CCATGCACAT AGAGCACGAT GCAGGCATAC ATCATTTTGA AATAGGAGCT 
AAATATTCCT ATGTCTGGGC AAAACAGAGT GCAAATGGCA GTGTCGTGGG AATTGGTGGT 
CGTTATGCAA TGGACTTAGG CTCTAATGTA TCATTTCATG CTTCAGGTTA TTACGCGCCA 
ACGGTACTCT CTTTCGGTAG CGTCGATGGC CAGTACGAAT TAGACAGCAA GGTGCAGTTT 
AAACTCAATC CGAATCTGGC GTTATTTGCA GGTTACAGGA ATATTCGTTT CCAGTACGAC 
AATGCCTCAA ACTCAACATT TGATAGTGGC TTCTATATCG GTGGACAGGC GAGTTTCTAA
 
Protein sequence
MKLKMWGCAL LLSSVSITAH ANDFSLGLND NVISTDLIFD LNKHSNASVG YIYSNDGGHL 
ASTAMHIEHD AGIHHFEIGA KYSYVWAKQS ANGSVVGIGG RYAMDLGSNV SFHASGYYAP 
TVLSFGSVDG QYELDSKVQF KLNPNLALFA GYRNIRFQYD NASNSTFDSG FYIGGQASF