| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3287 |
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| Symbol | |
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| ID | 5610399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3992348 |
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| End bp | 3993964 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934225 |
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| Product | peptidase S41 |
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| Protein accession | YP_001475019 |
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| Protein GI | 157376419 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.710782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000281065 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACATG AGTTTAATAA GGGAATATTT ATGAAGTTAC TCTCTGGAAA AACACTGACA
CTGCTACTCA CTTCAACCCT TTTTTCCTTA ACGGGTTGTG GTGGCAGTTC CGATTCGGGC
GGTGATTCGG GCTCCTCGGG TGGCGGGAGT TCTGGAACGC CGCAATGGGT GGCAGGGGTA
TTTGCCCCCG ACAGTGAACT TGCCGGTCAA TGTGCCGCCG ATCAGACTGG CTCCGAACTG
ACGGAGAAAC TCTGGCTAAG GTCTTGGAGC AACGATACCT ACCTCTGGTA TGACGAAATT
GCCGATATCG ACCCGGCGCC TTTCGGTGTT ATCCCCTATT TCAATCAGTT AAAAACCCAG
GAGTTGTCAG CTACGGGTAA TACCAAGGAC AAATTCCACT CCTCAATGCC CACCAGCGAG
TGGGAACAGT TAAACCAGTC CGGTGCCGCC GTGGGCTACG GCGCTCACTT CTTCATTCAG
CAGGCCAATG GTACTCAGGA CCGAAAGATA ACAGTGACCT ATGTCGAGCC AAACTCGCCG
GCATCGATCG AGCACGTTTC CCGTGGCTAC GTGGTCACAG AGATCGATGG CGTGAATGTA
AAAGATGCGG CCGATAGCGC CAGCATAGCG CTCCTCAACA GAGGCCTGTT TCCCGACAGC
GCCGGCCAGC ATACCCACTT CACATTTAAA CACTTAGATG GCCAGACCTT CAGTGATATG
ACCCTGACGG CGCAGACTAT TGTCTCTACC CCGGTTCAGA ACACTACAAC AATAGTAACG
ACCACGGGAA GAGTGGGTTA CCTGCAATTT AACTCACATA TCGCTACCGC GGAGCGTGGC
CTGTTCGATG CAGTCAATAC CCTTAGCGAC GCAGGGGTTG ATGACTTAGT GCTCGATCTC
AGATATAACG GTGGAGGCCT GCTAGCGATG GCTGGTCAAC TTGGCTATAT GATCGCCGGC
AATCAGGCAA CCCAAGGTAA AATATTTGAA CGCAGCACCT TCAATGACAA ACACCCCAAT
ACCGATCCCG TCACGGGCCA GGCTTTAACA CCTATGCCCT TCTTTAGTGA GAGCCTTGGC
TTTAATGCCT CCTTACTCGG AGCCGGTCAG TCTCTGCCAA GCCTGAACCT GTCTCGTCTG
TTTGTTCTCA CGACAGCCAA TACCTGCTCA GCCAGCGAGG CGCTGATGAA CGGCTTGCGC
GGCATCGATA TTGAAGTTAT CCAGATAGGG GATACCACTT GCGGCAAGCC TTATGGCTTC
TACCCGACAC CAAACTGTGG CACCACATTC TTTACCGTAC AGTTTAAAGG CGAGAACGAT
AAAGGCTTCG GCGACTATTC CGATGGTTTC GTCCCAAGCG TCAATCCGAC TCTGGAAAGT
GAAATCCCCG GATGTAGCCT GAGCGATGAC TTCAACCATG CCTTAGGCGA TACCGATGAG
CGATTGCTTA ATGCCGCTCT TTACTATCGC GCTAACGACC GATGCCCAAC GCTTCTGGGC
AAGGCGGCTA AAGCAAAACC AAGAGCTCAG TTCATCGATA CCGGTTTCAT TTTGGAAGAT
ACCCGAAGCC AGAATGTGCT GCACAATAAC CGTATTTTAA CTCAAAGCTC GCAGTAA
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| Protein sequence | MKHEFNKGIF MKLLSGKTLT LLLTSTLFSL TGCGGSSDSG GDSGSSGGGS SGTPQWVAGV
FAPDSELAGQ CAADQTGSEL TEKLWLRSWS NDTYLWYDEI ADIDPAPFGV IPYFNQLKTQ
ELSATGNTKD KFHSSMPTSE WEQLNQSGAA VGYGAHFFIQ QANGTQDRKI TVTYVEPNSP
ASIEHVSRGY VVTEIDGVNV KDAADSASIA LLNRGLFPDS AGQHTHFTFK HLDGQTFSDM
TLTAQTIVST PVQNTTTIVT TTGRVGYLQF NSHIATAERG LFDAVNTLSD AGVDDLVLDL
RYNGGGLLAM AGQLGYMIAG NQATQGKIFE RSTFNDKHPN TDPVTGQALT PMPFFSESLG
FNASLLGAGQ SLPSLNLSRL FVLTTANTCS ASEALMNGLR GIDIEVIQIG DTTCGKPYGF
YPTPNCGTTF FTVQFKGEND KGFGDYSDGF VPSVNPTLES EIPGCSLSDD FNHALGDTDE
RLLNAALYYR ANDRCPTLLG KAAKAKPRAQ FIDTGFILED TRSQNVLHNN RILTQSSQ
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