| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3235 |
|---|
| Symbol | |
|---|
| ID | 5614061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3928419 |
|---|
| End bp | 3929552 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934173 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474967 |
|---|
| Protein GI | 157376367 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA CTAACAAAAC GTTTTATATC TCTCTTATTG CAAGTGCTAT TGCATTAAGT
AGCTTCAACA CCATGGCTGC CGCTGAAGAA GATGGCATTA ATATCCACGG TGGCGTGCGT
ATTAACTACT CATATAAAGA TTACAGCGAG AGTTCAAAAG ATAAAGGTGG TGATCTGACA
TTTAACATGG CGTCACTAAG ATTTGACGGT AAGCATGGTA ACTGGGGATT AAAGTCGGAT
TACCGTTTCA CTGCCGACAC TAACTATATC AAATATGGCT ACGGCTTCTA CGATTTCAAT
CCTGAGTGGG AACTTCAGTT CGGTATTAAC CAAGTGCCAT TTGGCAACCT GGGATATATC
TCTAACAGCT ATTGGTTTGG CCTCCCCTAC TACCTTGGTT TCGAAGACGA CTATGATATT
GGTGTAAAAG CCACCTTTGA GAAAAACGGT TGGCACACAG ATATGGCTTT CTATAAGAGC
GCCGAATATG GACCAAGCGA AAACAAACAG TACGCAGCCG ACCTGTATAC CGGCACTATC
AACGGTACCG AGTATAACAA CGAAGAGACA AACCAGCTTA ACCTTCGCCA AACCTACACC
ATGGAACACC AGGGCGGCTC AACCACTTTT GGTGGCTCGG TTGAAGTTGG CCAGATCTAT
AACGCTAAAA CCGGTAACAA TGGCGACAGA TATGCCGTTG CCGCTAGCCT TGACAGCAAG
TTCCATGGCT GGAACCTGCA ACTTCAAGCC ATGCAGTATG AGTATGATGC AGCCGATAGC
GCGGATGACA ACAAGATCGC CATCGCAGTG GTCAGCTGGC AGTATGAAAT TGCCTCTAAG
GCACAGGTAT ACAGTATCAA CCTGGCAAAA ACGATCCCGA CCGATTGGGG TAGCGTAAAG
TTCTACAATG ACTTCGGCCT AATGACACCG GATGTTGCCG ACGAAACCTA CGATGACAGT
ATGCAAAACG TGTTAGGCGC CGCGATCGCA GCAGGTCCTA CTTACACCCA AATCGACTTC
ATCATGGGTA AGAACATGAC CTTCTCAACG GCAAACAACG ACCATATCGG TCTGCCTGAA
GTCGGTGATG ATTGGGACAA GCGCTTCAAC ATCTCCATGG CTTACTACTT CTAA
|
|---|
| Protein sequence | MMKTNKTFYI SLIASAIALS SFNTMAAAEE DGINIHGGVR INYSYKDYSE SSKDKGGDLT
FNMASLRFDG KHGNWGLKSD YRFTADTNYI KYGYGFYDFN PEWELQFGIN QVPFGNLGYI
SNSYWFGLPY YLGFEDDYDI GVKATFEKNG WHTDMAFYKS AEYGPSENKQ YAADLYTGTI
NGTEYNNEET NQLNLRQTYT MEHQGGSTTF GGSVEVGQIY NAKTGNNGDR YAVAASLDSK
FHGWNLQLQA MQYEYDAADS ADDNKIAIAV VSWQYEIASK AQVYSINLAK TIPTDWGSVK
FYNDFGLMTP DVADETYDDS MQNVLGAAIA AGPTYTQIDF IMGKNMTFST ANNDHIGLPE
VGDDWDKRFN ISMAYYF
|
|---|
| |