| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3221 |
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| Symbol | |
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| ID | 5613674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3910442 |
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| End bp | 3911338 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640934159 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474953 |
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| Protein GI | 157376353 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATA ACATTCCGTT AAGAGCGCTT CAGATTTTTG AGTCCTGTGC AAGATTAGAA
AGTTGCTCTC TTGCCGCTAA TGAATTGAGT ATTACTCAAA GTGCAGTGTC GCAACAAATT
AAACAGCTGG AAGACTACTT CTTAGAGAAG CTATTTTATC GAAATGCAGG AAAGATCAAC
CTGACCGAGG CTGGCCTTGA GCTTCGGCAG AGACTGTCCC CCGTTTTTTA TGATTTAAAT
AGTGTCTGCG CCAGTCTGGT CCCGACTATG TCAGGGGAGG TCAGGGTACA CTCTTATACT
TCTCTCGCGG CCAGATGGTT GGTTCCGAAT ATGGAGAAGT TAAGAAGGCA ATATCCTGAG
CTGAATATTA ACGTCGGTAT GTTTCAAAAT GACATTGAAA TGAGCGATAT GATTGCCGAT
ATATTTATCG TGACACGGGA GTCTCAAGAT GGTTATGTTT TTAAACCGCT AATTAAAGAG
ACGCTGATTG CATTCTGTAG TCCTGACTAC CTTGAAAAGT CGAAAGAAAT TACCACGCAA
AATTTACACG AGCACTGTTT GCTATTTTCC AAACATAAAG ATTATGGCCT GGATTGGGAT
AGCTGGTTCA GGGATAACGG CGTCGAAATG AGTTCGACTC AGAAGAAGTT GGTGTTCAAT
CATAATATGC TTGCCGTTCA AGCCGCTATA TATGGAGAAG GTATTGTACT GGGAGTTGAA
CAAACCTTAA GAGTCGAAAT TGAATCCGGT AATCTGGTTA AATTAGATCT CCCTTCATGT
TATTCAGGTT TTAATTATTC GATAGCTTAT AAGGCATCGA AGCAGCGCGA TGCCAGGATT
ATGAAAATCG TTGATTGGAT CTGTGATAAA TACCCCAGAG TGAGCGGTAG TAACTAA
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| Protein sequence | MNNNIPLRAL QIFESCARLE SCSLAANELS ITQSAVSQQI KQLEDYFLEK LFYRNAGKIN
LTEAGLELRQ RLSPVFYDLN SVCASLVPTM SGEVRVHSYT SLAARWLVPN MEKLRRQYPE
LNINVGMFQN DIEMSDMIAD IFIVTRESQD GYVFKPLIKE TLIAFCSPDY LEKSKEITTQ
NLHEHCLLFS KHKDYGLDWD SWFRDNGVEM SSTQKKLVFN HNMLAVQAAI YGEGIVLGVE
QTLRVEIESG NLVKLDLPSC YSGFNYSIAY KASKQRDARI MKIVDWICDK YPRVSGSN
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