| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3214 |
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| Symbol | |
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| ID | 5613321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3897238 |
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| End bp | 3898341 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934152 |
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| Product | putative efflux protein |
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| Protein accession | YP_001474946 |
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| Protein GI | 157376346 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATTT CACGAACACT AGCCGGTTTT GGGCTGGCAC CATTAACCTT ATTGATATTA
ACCGGCTGCG GCCAAGCTCC GGCACAACCA AATAGCGTTA TCACAAAAGC CGAGCGTCCA
ATACAAGTGA TGACGCTAAG CGACCTGCAA CAGGCCAACA TCAAGCTCTT CTCCGGTGTC
CTCGAAGCGA CACAAACCGC TAAGTTGTCA TTTAAAGTGC CGGGAACAAT TGAAGCCATG
CTAGTTAAAA GTGGCGATAA GGTCACCCAA GGACAAGTAC TGGCAAGACT CGATCCCCAT
GACTATCAAG TATTAGTGCT GGAGTTGGAA GCGCGTCTGG CAGAAGCGAG TGCTTCACAT
GAGTTGGCCG CGGCAGAGCT CAAACGTGTT AAGCAAGCCA TCGCAGATAA CGCCATCTCA
GCAGTCAATC TGGACCGGTC AGAAAGTGGT TATAAACGCA GCTTAGCCAT GGTCAAGGTG
ATGAGACAAA ATCTGCAAAA AGCGCAAGAT GCCTTATCTT ATACCGAGCT CAAAGCGCCT
TTTAGTGGGG TTATTGGCTC GCAATCTCAA GAAGCCTTCG AACAAACCTC GCCAGGGATC
TCGCTTTTCT CTCTCCATCA GCCGAATAAG TTAAAAGCGG TCGTCGATAT ACCTGAGAAC
TTAATCAGTA AACTATTTTT TAATCAAGAG GCTACAGTGA GTTGGTATGG TGGTTTAAAA
CCTGTGTCGG CCGTATTAAC TGAAATGAAC ACCCTTGCCG ACCCCATCAA ACAGACCTAT
TCCGTGCAGT TCCTCTTAGC GCAAAGCTCA CAACAGATGA CACCTGGTAA GGCGATAAAC
GTATCGGTGA ACCTTGGCGG CGGACAAGGC AGTTACTGCT TGCCCTATGC GGCCTTGGCG
GGGGAAGGGG CGGCTCAAAG TGTTTATCTG GTGAAAGACC AAATGATAAT CGAGAAGCCG
GTCCAGGTTG ACGCAATGGA GAAGAACTCT GTCTGTGTCA GTGGCGATTT AACCACTGGG
GATACTGTCG TTACTGCGGG CGTGCACTTT CTTAAACCAC AGCAACATAT TGTGGCCACA
TCTGTTAATG CGTTTAGCTA CTAG
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| Protein sequence | MTISRTLAGF GLAPLTLLIL TGCGQAPAQP NSVITKAERP IQVMTLSDLQ QANIKLFSGV
LEATQTAKLS FKVPGTIEAM LVKSGDKVTQ GQVLARLDPH DYQVLVLELE ARLAEASASH
ELAAAELKRV KQAIADNAIS AVNLDRSESG YKRSLAMVKV MRQNLQKAQD ALSYTELKAP
FSGVIGSQSQ EAFEQTSPGI SLFSLHQPNK LKAVVDIPEN LISKLFFNQE ATVSWYGGLK
PVSAVLTEMN TLADPIKQTY SVQFLLAQSS QQMTPGKAIN VSVNLGGGQG SYCLPYAALA
GEGAAQSVYL VKDQMIIEKP VQVDAMEKNS VCVSGDLTTG DTVVTAGVHF LKPQQHIVAT
SVNAFSY
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