| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3213 |
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| Symbol | |
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| ID | 5613320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3894146 |
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| End bp | 3897229 |
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| Gene Length | 3084 bp |
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| Protein Length | 1027 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934151 |
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| Product | putative efflux protein |
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| Protein accession | YP_001474945 |
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| Protein GI | 157376345 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTAG CCGAATTTGC CATTAAGCAG CGTATATTTG TGCTGTTCTT CAGTGTGCTT
TGCGTGATTG TCGGATTGGT TTCCTACTTT GAGCTAGGTA AGCTTGAGGA CCCCTCATTT
ACCGTAAAAA GTGCCGTGGT TGTAACGCTT TACCCTGGGG CTTCGGCTCA AGAGGTTGAG
CATCAAGTTA CCGACAAAAT TGAGACTAAA CTGCAAGAGA TGGAGTCAAT GTGGAAATTG
CGATCCCTGT CTCGCCCAGG GAGCTCGATG ATTTTTGTGG ATCTGAAAGA GACGACCAAC
TCAAAAGATC TGCCTCAAGA GTGGGATCTA CTCAGACGTA AAATCAGCGA TGTGAAATTA
ACCTTACCGG CAACTGCCCA GATAAGTATC GTCCAGGATG AGTTTTCAGA AGTCTACGGC
ATGCTGTTTA GTGTGTATGG CCAAAACGCT GAACCCGAAC AGCTACGCCA ATATGCTAAA
GAGCTGCAAC GCCGCTTGAA AACCATAGAG GGTATTAAAA AGATTGAACT GCATGGGGTG
CAGCAGCAGG CTGTATATGT AGACTTACCC GATGAACGGT TAGCGCAATA CGGGATCTCT
TCTGCACAAG TTATCAATCA ACTCGCGACC CAAAACCTGA CCTATGACAG TGGTAGTTTT
GCTGCCGATA ATGAGCGGAT CCGTATCGAT CAGAGTAGCG GGTTTAAATC ACTGCAAGAT
ATTAAAGATT TGATTATCAA AGGTGGAGTG GGTGAGTACA GTACCGGATT GATCCGTTTA
GACGATATTG CAGAGATCAG TTTAGATTAC CAAACACCGG CTACAACCTT GAGTCGTTAT
AATGGCATGC AGGCGATTAC ACTGGCGGTT AGCCCTGTTG CAGGTATCAA TGTCGTCAGC
TTAGGTGAGC AATTAAATCA AATTATCGGT GACTATCAAC AAACACTGCC GTTAGGTATT
GAGATAGGTA AAATAGCTTT TCAGCCAGAT GAAGTGGACA AATCGATTGA AGAATTTGTC
ATTAACTTGC TTGAAAGTGT GTTGATTGTA TTCGCGGTGC TGTTGATTTT TATGGGGTTC
AAAAGTGCAA CCATAGTCGG TGGTGGCCTT CTGTTTACGA TTCTATTAAC CCTGATCTAT
ATGAACATTG CCGGGGTTGA TCTGCAACGT GTCTCTTTAG GCAGCTTTAT TCTTGCGCTG
GGCATGCTGG TTGATAACGC CATCGTGATC ACCGACCTGT TTGTAGTAAA GCTTAATAAA
GGCATGGAGC GCACCAAAGC CGCGATTGAT TCGGTAAAAG AAACATCTAA ACCGCTATTG
GCAGCCACTG TGATTGCGAT TATGGGCTCG AGTCCGGTGC TGTTTTCTAA AACGGATTCC
GGCGAATTTG CTATCTCAGT CTTCTTAATT ATCTGCTCCT CACTGCTGTT CTCCTGGTTA
GTCGCTGTCA CGTTAACGCC GCTACTGTGT TGGCTGTGGA TCAAGCCGGA TGCGAAGAAG
AACGCTGTCG AGACTAAAAC GAGTCGATAT CAACTGGCGG TAAATTGGAC CGTTTTGAAT
CCGCTTAAAG CCATCTCAAT GGTGATCCCA TTGTTACTGG TAACAGCAAT AGCTGTGCCT
TATGTTGCTG TGAACTTTAT ACCTAGCTCA GACAGACCTA TGGTGTTTCT CGACTACTGG
TTACCCAATG GTGCCCAAAT AGAGCAAACA TCCTCTGATA TGAAGAAAGT TGAACAATGG
TTGATAGAAC AACCCGAAGT GAGCAGTATT GCCAGTTATG TGGGGGCCAG TGCGCCGCGC
TTTTCGGTCA CGGTAGAGCC TGAGCCTTAT GACACGAGTT ATGGCCAAAT TTTAGTTAAT
GTCGATGACT ATGAAGGGAT TGAATCGCTA ACTAAACGTG GAGATATTTG GCTAGCGGAT
AATTTTCCCA ATGCAGAGCC TCGTTTTAGA GCATTGAAGC TCGCTACCAA AGATAAGTTC
AGCGTCGAGG CACGCTTTAG CGGCCCGGAT CCCAAAGTAT TGCATCGGCT GTCAGAGCAA
GCGCAGTCGA TAATGCGGTC TAATAGTCAT TCCAAATACG TACGTGATGA TTGGCGTCAA
CACAGTAAAG TGATAGCACC TGTGATCAAC CAAGAGCAGG CTCGCCGCGC GGGACTTAAT
CGCACGGATA TCTCCTTAGC GATTAAACGA GCCACTGAGG GGGTGCCATT GGGCACGCTG
AATCAGGGAG ATCAACTCAT CCCGATTAGC TTTCGCAGTG CTAATGCTAA CTTAAGCAAT
TTAGAAACCT TACCCGTACG TTCCCTGCTG GGGATCCACA GCGTACCCTT GGGCCAAGTT
GTCGATAGTT TTGAGCTTAA ATCGGAAGAG AGCCTAATCT GGCGTCGTAA CCGCGTACCG
ACTATCACCG CCCAAGCGGA TGTCTTCGAT GCCACGCCTG CTGAGGTTCG TAACCAGATA
AAAGCGCAAA TTGAAGCCAT TCAGTTACCT GCGGGCTATG CGTTTGAATG GGGCGGTGAG
TATTACGATG AAAACCGCGC GATTACCGAT ACCTTAAGTC AGTTGCCGAA AGCGCTCTTG
ATGATGGTGG TGATCATGGT GGCAATGTTT AACGGCTTTA AGCAACCGGC GATTATCTTG
ATCACTCTTC CGTTAGCGGC GATAGGCGTG ACCTGGACCT TGCTGTTGCT CGACAAACCC
TTCGGTTTTA TGGCGTTGAT TGGAGCCATC ACACTATCGG GGATGATCAT TAAAAATGGC
ATAGTGCTGA TGGATCAGAT CGAGTTAGAA CGGGCTAATA ACAGACCATT ACGTGACGCG
GTACAGGCGG CGACAATCAA TCGTACCATG GCCATTTCGA TGGGGGCGCT CACAACCGCA
CTGGGGATGA TCCCGTTACT TAGCGACCGC CTATTCGATC AGATGGCGGC AACCATTATT
GGTGGGCTTG CTGCGGCTAC GCTTTTGTCA TTGTTTATCA TGCCGGCATT CTACTGCTTG
TTTTATCGCG GCTCGGATAA AACTAAAACA GACGCTATAC CAGATGATTC AACGATAATC
GCAGCTATAC CGGAGCAAAA ATAA
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| Protein sequence | MNLAEFAIKQ RIFVLFFSVL CVIVGLVSYF ELGKLEDPSF TVKSAVVVTL YPGASAQEVE
HQVTDKIETK LQEMESMWKL RSLSRPGSSM IFVDLKETTN SKDLPQEWDL LRRKISDVKL
TLPATAQISI VQDEFSEVYG MLFSVYGQNA EPEQLRQYAK ELQRRLKTIE GIKKIELHGV
QQQAVYVDLP DERLAQYGIS SAQVINQLAT QNLTYDSGSF AADNERIRID QSSGFKSLQD
IKDLIIKGGV GEYSTGLIRL DDIAEISLDY QTPATTLSRY NGMQAITLAV SPVAGINVVS
LGEQLNQIIG DYQQTLPLGI EIGKIAFQPD EVDKSIEEFV INLLESVLIV FAVLLIFMGF
KSATIVGGGL LFTILLTLIY MNIAGVDLQR VSLGSFILAL GMLVDNAIVI TDLFVVKLNK
GMERTKAAID SVKETSKPLL AATVIAIMGS SPVLFSKTDS GEFAISVFLI ICSSLLFSWL
VAVTLTPLLC WLWIKPDAKK NAVETKTSRY QLAVNWTVLN PLKAISMVIP LLLVTAIAVP
YVAVNFIPSS DRPMVFLDYW LPNGAQIEQT SSDMKKVEQW LIEQPEVSSI ASYVGASAPR
FSVTVEPEPY DTSYGQILVN VDDYEGIESL TKRGDIWLAD NFPNAEPRFR ALKLATKDKF
SVEARFSGPD PKVLHRLSEQ AQSIMRSNSH SKYVRDDWRQ HSKVIAPVIN QEQARRAGLN
RTDISLAIKR ATEGVPLGTL NQGDQLIPIS FRSANANLSN LETLPVRSLL GIHSVPLGQV
VDSFELKSEE SLIWRRNRVP TITAQADVFD ATPAEVRNQI KAQIEAIQLP AGYAFEWGGE
YYDENRAITD TLSQLPKALL MMVVIMVAMF NGFKQPAIIL ITLPLAAIGV TWTLLLLDKP
FGFMALIGAI TLSGMIIKNG IVLMDQIELE RANNRPLRDA VQAATINRTM AISMGALTTA
LGMIPLLSDR LFDQMAATII GGLAAATLLS LFIMPAFYCL FYRGSDKTKT DAIPDDSTII
AAIPEQK
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