| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3208 |
|---|
| Symbol | |
|---|
| ID | 5613393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3887296 |
|---|
| End bp | 3888651 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934146 |
|---|
| Product | sensory transduction protein kinase |
|---|
| Protein accession | YP_001474940 |
|---|
| Protein GI | 157376340 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAG TGACGCTACA ACGACTCATA GAAGATTATT TCGAGAATCC ATTTCGTCAA
ATAACGATTC CTGCAGGCGA GGTGGTCTTA AAACAGGCGG GTTATAACGA TCGCCTCTAT
TGGGTAAAGT CCGGGGAGTT AGAAGGTTTT TTTTCTTCCA CAGCCAAAGA CAGAAAGACC
AAGGTATTTA CCGCACCCGC TGGAACCTTT ATTGGCGTGC ACAGTTTTTT TGCAGAAACT
CTCGAAGCGT CAACGACTGT GATCGCAAAA GAGAACAGCG AGCTTGCTTG GATTGATACT
TCGACACCAG TGGTATCGCC AGAAAAATAT GGCCCGCTAA CGGCTCAATT TACACCAGTG
ATCGTTAAAG AGTTAGCGCG CAGACAGCGC CGAGCCAGCA TGGAAGCGGT TGAGCGCGAA
ACGGTACAGA ACAAGCTAAA TACCGCCGAG CAGATGACCA CGTTAGGGCA GCTGGCCGCG
GGCATTGCTC ATGAGTTAAA TAATGCGGTC GGTGTTATTA ACAGCAAAAC GGAGCGATTA
CAGACAGTCG TATTTGATCT GATCGAAGAG TGTCACCCGG ATACTAGGCA ATTTCTCGAA
CATGGTTTAC TTTATGGTCA GAAGGCGAGT TCATCAGAGG TTAGAGCCAG AGCAAAAGAG
CTGATGAAGG AGTATCGAAT TGACCGTGAT AGCGCCCGAA AGCTTGCCCG CGCCGTACCT
CATGGTGAAA TCGACAGCTC GTGGTTAACC GATATTGAAC AAGCTCTGCG CTATTGGGAG
ATCGGTAGGG ATCTGCACGA TATGCGACTG GCTTCTAAGC ATTCGGTGGG CATAGTGAAA
TCGGTGAAAC AATTAGGCCG AACCGATACG GATACGGAAG AGTGGTTAGA TGTTAACGAT
AGCATCAATA AAGCGCTGGC GTTATTACAC AATAGTTTAC GTGGCATTCA TGTAAAAATA
AGCCCCGCGG TGTTGCCTAA ACTGAAAGCC AGTTCAACGG AGCTGGTGCA AATCTGGGTC
AACATTATTA AAAATGCCAG TGATGTGTTA GGTCATACCT CTGAGCCAGC TATTGAGATA
TCCACTCGTC ACGTACGCAA TATGGTACAG ATAACGGTTG CTAACAATGG CCCTGAGATT
GATGAAGTAA CGCGAAGAAA AATATTTCAA CCGAACTTTA CCACCAAAAA AGGTGGGTTA
TCTTTCGGGC TTGGGCTTGG GCTCTCAATC GTTCAGCGAA TTGTAAACAG TTACGGCGGC
AGTATTGCGG TAATGAGCAA TGATGAAAAA ACCATATTCA GGATAAAACT GCCTGTACCT
GCACAGGAAA TCGAGGGAAC TGATGGAAAA AATTAA
|
|---|
| Protein sequence | MEKVTLQRLI EDYFENPFRQ ITIPAGEVVL KQAGYNDRLY WVKSGELEGF FSSTAKDRKT
KVFTAPAGTF IGVHSFFAET LEASTTVIAK ENSELAWIDT STPVVSPEKY GPLTAQFTPV
IVKELARRQR RASMEAVERE TVQNKLNTAE QMTTLGQLAA GIAHELNNAV GVINSKTERL
QTVVFDLIEE CHPDTRQFLE HGLLYGQKAS SSEVRARAKE LMKEYRIDRD SARKLARAVP
HGEIDSSWLT DIEQALRYWE IGRDLHDMRL ASKHSVGIVK SVKQLGRTDT DTEEWLDVND
SINKALALLH NSLRGIHVKI SPAVLPKLKA SSTELVQIWV NIIKNASDVL GHTSEPAIEI
STRHVRNMVQ ITVANNGPEI DEVTRRKIFQ PNFTTKKGGL SFGLGLGLSI VQRIVNSYGG
SIAVMSNDEK TIFRIKLPVP AQEIEGTDGK N
|
|---|
| |