| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3206 |
|---|
| Symbol | |
|---|
| ID | 5612737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3883982 |
|---|
| End bp | 3885247 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640934144 |
|---|
| Product | putative esterase |
|---|
| Protein accession | YP_001474938 |
|---|
| Protein GI | 157376338 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2819] Predicted hydrolase of the alpha/beta superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAACA AAATCAAAAT TACGATATTG ACTTTAATAG CAATTTCTTT CGTCTTTGTT
AATGAAAGAG CTTTTGCTTT CGGTGAGCAT TTTAAGGAGA TTACTAAACC TAACGAAATA
CGTCACATTA GAGTTACTGA AGATATATCT CTCGATATTT ACTTGCCTCC TGGCTCTAAT
AGATCTGAGT TGCTTCCCAC GCTATATGTA ATGGATAGTC AGCATTACAT GTACAATGCA
ATTGGCTATC AACAATCCCT TCGCTTTGGT GTCAATATTA GCCCAAAATA TATTGTCGTT
GGAATCAATA CAGAAAAGTT AGAAGCTAGT CGCGGTGCAT TATTAGGTGG CGATGCAGAC
AACATGATTG CGCTGATGGA AAACTCTATT GTTCCATATA TTGAGGAAAA CTACCCAAGC
AATAAACGAA GAATGTATTT TGGTTGGCAG TTTGGAGCTA TGTTCGGGAT AAAATTGTTC
AATGCGAACC CTAGACTTAT TGAAGGGTAT TTTCTGGCTA GTGGCCAGAA CTACAGTAAA
GAGCAACAGG GAAAGCTAGA GGATAATTTA AAGAAAAATA GTGGGTTGGG GAGTTATTTC
TACCTTTCTC TTGGGGAGAT GGAGCACCAT ACACTTGATG GCCATAAAGC AATTACTTCC
CTCTTTGAAA AATACAAGGC AGCGGAAATA AATTGGAAAT TTAGCTACTT TGATCGATTT
TCTAGCAGAT ATGACCATCA CACAACGCCA TTGGAAAGTT TAACTCATGG CTTGGAATGG
TATTTTTCAG ATTATCCGGA CTTAACTTTC CACTCTATTG ATGACATTAC AAACTTTGGT
GGTGTGGCCG CTATAAAAGC CTACTACCAA AATCGTGCAA AGCGGTATCA GGTAAGCTCA
GACGTAAGTG AACAATCGAA ATTTAGTATG TTTCGCCACG CAGCACAAGT TAATGACTAC
AAACTTTTTA TGAGTTTTGA GCAAGAATTG GGGATATATG AGATCACAGG CTGGTATCGA
TTCTTTGCTC AGTTCTTTTT AAAAAATAAC GAAATTAAAC GCGCAAAGGA TACTTATAAA
AAAGGCTTGT TGGAATATCC AGAAAAACAT AGCTACTGGG CTGATCTTGC ATCGATCTAC
GAGAATCAAC AGGATTATCA TAAAGCAATT GATTGTTATC AAAACGCTTT AAAATACACG
CAAAAATCCG ATCTTGTCTT TACCAAATAT AAACAAAATG TTATTAGGTT AAACGATGTA
TTGTAA
|
|---|
| Protein sequence | MPNKIKITIL TLIAISFVFV NERAFAFGEH FKEITKPNEI RHIRVTEDIS LDIYLPPGSN
RSELLPTLYV MDSQHYMYNA IGYQQSLRFG VNISPKYIVV GINTEKLEAS RGALLGGDAD
NMIALMENSI VPYIEENYPS NKRRMYFGWQ FGAMFGIKLF NANPRLIEGY FLASGQNYSK
EQQGKLEDNL KKNSGLGSYF YLSLGEMEHH TLDGHKAITS LFEKYKAAEI NWKFSYFDRF
SSRYDHHTTP LESLTHGLEW YFSDYPDLTF HSIDDITNFG GVAAIKAYYQ NRAKRYQVSS
DVSEQSKFSM FRHAAQVNDY KLFMSFEQEL GIYEITGWYR FFAQFFLKNN EIKRAKDTYK
KGLLEYPEKH SYWADLASIY ENQQDYHKAI DCYQNALKYT QKSDLVFTKY KQNVIRLNDV
L
|
|---|
| |