| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3205 |
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| Symbol | |
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| ID | 5612736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3882033 |
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| End bp | 3883658 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934143 |
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| Product | 2-nitropropane dioxygenase, NPD |
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| Protein accession | YP_001474937 |
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| Protein GI | 157376337 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | [TIGR02814] PfaD family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCTA CGACAACAAA TGAAAACCTA GCGCCTTGGC CGTGGGCTGT GAAGAGCAGC
GATATCAGCT TCGATGTTGG CACTATGGAG CAGCAACTTA AAGACTTTAG CCGCAGCTGT
TATGTGGTTA ACCACAGCGA GAAAGGTGTG GGTATCGCCC ATGAAGCGCA AGTGGTTACT
GAATCGAGTG CCAATGGCGA TCAGCCAGTC AGTGCTTTTG CTCCAGCCCT TGGCACTGAG
AGCTTAGGTG ACAGCAACTT CCGCCGTGTG CACGGGGTAA AATACGCCTA TTATGCTGGT
GCGATGGCTA ACGGTATCTC ATCTGAAGAG CTGGTTATCG CCCTTGGTCA AGCAGGCATT
TTATGCTCAT TTGGCGCAGC GGGTCTTATC CCAAGCCGCG TAGAAGCAGC GATTAACCGC
ATTCAGGCAG CACTGCCAAA TGGCCCCTAC ATGTTTAACC TTATCCATAG CCCAAGTGAG
CCAGCACTAG AGCGTGGCAG CGTAGAGCTA TTTATTAAGC ATAAGGTTCG CACCGTTGAG
GCTTCGGCAT TCCTGGGTCT GACACCACAG ATTGTCTACT ACCGCGCAGC AGGCTTGAGC
CGTGATGCAC AGGGTAATGT GGTAGTCGGT AACAAGGTTA TCGCAAAAGT GAGCCGCACC
GAAGTGGCCG AAAAGTTCAT GATGCCAGCA CCTGCTAAGA TGCTGCAAAA GCTTGTGGAT
GATGGCTCAA TCACGCCTGA GCAGATGGAG CTGGCACAGC TTGTTCCTAT GGCGGATGAC
ATCACAGCAG AAGCGGATTC AGGCGGTCAT ACTGATAATC GTCCTCTGGT TACTTTGCTG
CCAACAATCC TCGCACTTAA AGAGGAGATC CAGGCTAAGT TCAACTACCC AACACCGATT
CGTGTCGGTT GTGGTGGCGG CGTTGGTACT CCCGATGCGG CCCTTGCCAC TTTCAATATG
GGCGCAGCCT ATATTGTCAC AGGCTCAGTC AACCAAGCCT GTGTTGAAGC AGGTGCCAGT
GAGCATACCC GTAAGCTACT TGCCACCACC GAGATGGCTG ATGTGACGAT GGCTCCTGCG
GCGGATATGT TCGAGATGGG CGTTAAGTTG CAGGTAGTTA AGCGCGGCAC TCTGTTCCCA
ATGCGTGCTA ACAAGCTTTA TGAGCTGTAC ACACGTTATG ACTCTATCGA AGCGATCCCA
ACTGCTGAGC GTGAGAAGCT TGAGAAGCAA GTGTTCCGTT CAACCTTAGA TGAGATCTGG
GCAGGCACTG TAGCGCACTT TAACGAGCGC GACCCTAAGC AAATCGAACG CGCTGAAGGC
AACCCTAAGC GTAAGATGGC ACTGATCTTC CGCTGGTACT TAGGGCTTTC AAGCCGCTGG
TCTAACTCAG GTGAAGCTGG TCGTGAGATG GATTACCAGA TCTGGGCAGG CCCGGCACTG
GGCGCATTTA ACCAGTGGGC CAAGGGCAGT TACCTAGATA ACTACCAAGA CCGTAACGCT
GTCGATGTAG CCAAGCACCT GATGTATGGC GCCGCTTACC TCAACCGCGT GAACTCGCTG
ACCGCTCAAG GGGTTAAGTT ACCATCTGAG CTACTGCGCT GGAAGCCGAC GCAGAGAATG
GCTTAG
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| Protein sequence | MNPTTTNENL APWPWAVKSS DISFDVGTME QQLKDFSRSC YVVNHSEKGV GIAHEAQVVT
ESSANGDQPV SAFAPALGTE SLGDSNFRRV HGVKYAYYAG AMANGISSEE LVIALGQAGI
LCSFGAAGLI PSRVEAAINR IQAALPNGPY MFNLIHSPSE PALERGSVEL FIKHKVRTVE
ASAFLGLTPQ IVYYRAAGLS RDAQGNVVVG NKVIAKVSRT EVAEKFMMPA PAKMLQKLVD
DGSITPEQME LAQLVPMADD ITAEADSGGH TDNRPLVTLL PTILALKEEI QAKFNYPTPI
RVGCGGGVGT PDAALATFNM GAAYIVTGSV NQACVEAGAS EHTRKLLATT EMADVTMAPA
ADMFEMGVKL QVVKRGTLFP MRANKLYELY TRYDSIEAIP TAEREKLEKQ VFRSTLDEIW
AGTVAHFNER DPKQIERAEG NPKRKMALIF RWYLGLSSRW SNSGEAGREM DYQIWAGPAL
GAFNQWAKGS YLDNYQDRNA VDVAKHLMYG AAYLNRVNSL TAQGVKLPSE LLRWKPTQRM
A
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