| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3198 |
|---|
| Symbol | |
|---|
| ID | 5612084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3856966 |
|---|
| End bp | 3857733 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640934136 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474930 |
|---|
| Protein GI | 157376330 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTAT GGGTCATGAT AAAAAGCCTA TTATCAGGGA TGTTATTAAC TGTTTTTGTA
TCTGGTTATG TGAACGCAGA AACTGCGTCA GATATCGTAG ATAGGTCAGA TGAACAGATG
CGCGGCGATT CTAGCTATTC GGTGGCGACC ATGAAGATCA TTCGCCCCGA CTGGACCCGC
ACCATGAGTA TGAAAAGCTG GACCAAAGGT CAGGATCTGT CATTGGTTCT GGTTACCGCT
CCGGCGAAAG ATAAAGGTAG TGCATCTTTA AAGCGTCAAA AAGAGATGTG GAGCTGGATC
CCGAGTATCG AGCGAGTCAT TAAAATTGCC CCCTCGATGT TAAGTCAATC CTGGATGGGA
TCAGATTTTA CCAATGACGA CCTGATCAAT CAGTCCTCTA TCGTGGTGGA TTATGAGCAT
AAATTAATCA AAGAGGAGCT GTTCGATAAC GATAACACCT GGGTTATCGA CGCCATCGCG
AAACCCGACG CTCCAGTGGT TTGGAGTAAG GTGAGATTAT GGATATCGAA GCAGACCTAC
CTGCAGCGTA AAGTTGAATT TATCGATGAG TTTGATGAGT TGGTTAATAC CATGGAAACC
TATGATGTTA AGGAGCTGGG CGGTCGCAAT ATTGCAACCC GTATGACGAT GATCCCTGCC
GATAAACCCG ATCAGAGAAC CGAGCTTATC ACCCATGAAG CTCAGTTTAA TTTTGATATT
GGCGATGACT TTTTCTCGCA ACAGCAGATG AAAGAATTAA GGGATTAG
|
|---|
| Protein sequence | MRLWVMIKSL LSGMLLTVFV SGYVNAETAS DIVDRSDEQM RGDSSYSVAT MKIIRPDWTR
TMSMKSWTKG QDLSLVLVTA PAKDKGSASL KRQKEMWSWI PSIERVIKIA PSMLSQSWMG
SDFTNDDLIN QSSIVVDYEH KLIKEELFDN DNTWVIDAIA KPDAPVVWSK VRLWISKQTY
LQRKVEFIDE FDELVNTMET YDVKELGGRN IATRMTMIPA DKPDQRTELI THEAQFNFDI
GDDFFSQQQM KELRD
|
|---|
| |