Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3169 |
Symbol | |
ID | 5610912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3827342 |
End bp | 3828178 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934107 |
Product | pseudouridylate synthase |
Protein accession | YP_001474901 |
Protein GI | 157376301 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAGAAG AGACGGTTGA AAAAGATCCA GATATAGCTG AGTCTCCGGA AATGGTAGAA GATGCTGTCG AAGAGTCAGC GCCCGAAATC GAGATTCTGT TTGAAGATGA TGATGTGGTG GCTATTCATA AGCCTGCAGG CCTGTTAGTG CATCGCTCTT ATCTGGCACG TCGCGAGCGT TTTTTTGCGA TGCAATTAAC CCGCGATAAA GTGGGTTGCC ATGTATTTCC TGTACACAGA CTCGACAGGC CAACCTCGGG TGTGTTGCTG TTTGCCAAGA GTAGCGAGAT GGCCAATAAA TTGTGTGAAC AATTTGAAGC TAAAACTGTA GATAAGCATT ACTTAGCCAT AGTCAGGGGG AATATGCATG AGGCCGACAC CTTAGATTAT GCGCTTAAAG TGGAGCTTGA TGATCACGGT GATAAAGATG TTGATCCTAA TAAAGCTGCG CAAGATGCGG TAACCAGCTA TCAGCCGCTG CTTAATACTG AAATCCCTTT TCCGTCGGGA CGATATGCAA CGAGTCGATA TGCGTTGGTA AAGTTAACTC CGCATACAGG GCGTAAACAT CAGTTACGTC GTCATATGGC TCATTTAAGA CACCCTATTG TCGGCGACAC AACCCATGGT GACGGTAAGC AGAATAAATT CTTCAGAGAA CATTTCTCGA TGAACAGACT ATGGTTGATC GCCAAACACC TCTCTTTCGA TCACCCCAGA AGTGGAGAGC GTATCACTAT CGAAACAGAG CTTGAGGAGC AGTGGTTCAC CTTGTTTGAG GCGTTTGGGT GGGATGAAGA GAAGTTAGCG ACGGATAGAT CTTATTTTAT TGTGTAA
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Protein sequence | MLEETVEKDP DIAESPEMVE DAVEESAPEI EILFEDDDVV AIHKPAGLLV HRSYLARRER FFAMQLTRDK VGCHVFPVHR LDRPTSGVLL FAKSSEMANK LCEQFEAKTV DKHYLAIVRG NMHEADTLDY ALKVELDDHG DKDVDPNKAA QDAVTSYQPL LNTEIPFPSG RYATSRYALV KLTPHTGRKH QLRRHMAHLR HPIVGDTTHG DGKQNKFFRE HFSMNRLWLI AKHLSFDHPR SGERITIETE LEEQWFTLFE AFGWDEEKLA TDRSYFIV
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