| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3148 |
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| Symbol | lpxB |
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| ID | 5610179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3804411 |
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| End bp | 3805553 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934086 |
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| Product | lipid-A-disaccharide synthase |
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| Protein accession | YP_001474880 |
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| Protein GI | 157376280 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0763] Lipid A disaccharide synthetase |
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| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.029536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0540886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA CTACACATCC CACTTTTGCC ATGGTTGCCG GGGAGCTCTC CGGAGATATC
TTAGGCGCAG GCTTAATTAA AGCATTGCAA CACCAATATC CTGACGCACG TTTTGTCGGA
ATTGGTGGTC CACGTATGGA AGCGCTGGGT TTTGAGTCTA TCTTCTCATT CGAAGAGCTT
GCGGTAATGG GCATTGTTGA AGTGCTTTCT CGCTTACAGC GTCTGTTGAA AGTCCGTAAA
ACTTTGATCG ATGAGATTTG CTCGATCGAA CCTGCGTGTT TTATCGGTAT CGATGCCCCG
GATTTCAATA TCGGATTAGA GTTAAAACTT AAAGCAAGAG GCATTAAAAC GGTTCACTAC
GTTAGCCCCT CCGTTTGGGC CTGGCGTCCT AAACGTATCT TCAAGATAGC CAAGGCTACC
GATATGGTGC TGTCACTGCT GCCTTTTGAA AAGGCATTTT ATGACAAACA TGATGTCCCA
TGTACATTTG TCGGTCATAC ATTAGCCGAC GACATTCCAT TGATTAGCGA CAAGACCGCT
GCCCGTAACT TGCTGGGCTT GGATGCTGAT GCTGAGTATT TAGCCGTACT TCCCGGTTCC
CGAGGTGGCG AGCTGAAGCA GCTGGCTGAG CCTTTCGTTA AGGCGGCGAG TCTGATTAAG
AAGCGTTACC CGGATATTCG TTTCGTGACG CCATTGGTTA ACCAAAAGCG CCGTGAACAA
TTTGAAGAGG CACTTAAACT CCATGCTCCC GATCTTGAGA TCACCTTAGT CGAAGGTCAC
TCCCGGGAAG TGATGGCAGC CTCGGATTGT ATCTTGCTCG CATCGGGTAC CGCGACGTTA
GAAGCTATGT TGGTTAAGCG TCCAATGGTT GTGGCGTATC GGGTGAGCCC TATCACCTAT
AAGATAGCCA AGGGCATGAT GCAAATTGAC CAATACTCCT TACCTAACCT GTTATCGGGT
GAGACGCTGG TGACTGAGCT GATCCAAGAA AATTGCACCG AGTCTTTGAT TGCCGACGCG
ATCTCTGAAC AGTTGGACAG CGACTTCTCA CCTTTGAAGG AAAAATTTAT GCAGCTACAC
AAAGGGCTGA AGTGCAATGC CAGCGAACGT GCAGCTGAAG CCGTCATTAA GCTGATCCAA
TAG
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| Protein sequence | MSETTHPTFA MVAGELSGDI LGAGLIKALQ HQYPDARFVG IGGPRMEALG FESIFSFEEL
AVMGIVEVLS RLQRLLKVRK TLIDEICSIE PACFIGIDAP DFNIGLELKL KARGIKTVHY
VSPSVWAWRP KRIFKIAKAT DMVLSLLPFE KAFYDKHDVP CTFVGHTLAD DIPLISDKTA
ARNLLGLDAD AEYLAVLPGS RGGELKQLAE PFVKAASLIK KRYPDIRFVT PLVNQKRREQ
FEEALKLHAP DLEITLVEGH SREVMAASDC ILLASGTATL EAMLVKRPMV VAYRVSPITY
KIAKGMMQID QYSLPNLLSG ETLVTELIQE NCTESLIADA ISEQLDSDFS PLKEKFMQLH
KGLKCNASER AAEAVIKLIQ
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