| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3144 |
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| Symbol | |
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| ID | 5614193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3797781 |
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| End bp | 3798662 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934082 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001474876 |
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| Protein GI | 157376276 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0138682 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTTG GCCTAGCGAC AGAGTTTTAT CCCGAAGAGT ATCAGTATCA ACCTGAATTG
TACGGTGTTG ATAATACTGA ACTCGATTTA GTGGAAATTA TTCAGCAACT ACACGAAAGT
TTAGATCCCA GGACAGTTTT TGCCTGTTTC GGCAAAGTCA TGGGACAACA TTTGCCTATG
CATGGTGTAA AGCTCCACTA CAAACATTAT CAGTTTAGTT GGGGAAGGCC TCATGGGCTA
GTTATTAAGC AACAGCTGGA ATGCTCCGGT GAGGCGGCAA CTCTTCAATA CAGCTTGAAG
TCTCCGTTAA CGCCGTCACA AGCACAGCGA TTACAGTTAC TGCAGACTCT GGTGCTCTTG
CCACTGTTTA ATGCAACCCA GTTCCATGAG ATGTCTCAGC AGGCCATGTA CGACTCTCTC
ACCAAGCTAG GTAATCGTCA CTATTATATG GAGAGCCTGA AGAAAGCGAT TGCAACGGCC
AAGCGCTATA GTAACGATCT CTCATTAATC GTGCTTGATT TAGATAATTT CAAGAAGCTT
AACGACCGTT ATGGCCACCA ATTTGGCGAT AACGTGCTAT CTGAATTTGG CCAACTATTA
ACCGGCGCTA TCCGAAATAC CGATCAGGCA TTTCGCATCG GTGGGGATGA GTTTGTCGTC
GTCGTGCGCG GGGACAAACA GGCCGCCAGC ATCTTATGTG AACGGATATT ATCCTCTATG
TCATCGCTAC CTTTGTTTGA AAAACATGAG ATCCAAACCA GTTTAGGTGT CTCTCAATGG
ATAAACGGTG AGGTCCCATC GGCACTGTAT GAACGAGCCG ACAGGGCGCT ATATAGAGCC
AAGGCGGCCG GACGACAATG TTTCAGGGTT GATGGTGAGT AA
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| Protein sequence | MDFGLATEFY PEEYQYQPEL YGVDNTELDL VEIIQQLHES LDPRTVFACF GKVMGQHLPM
HGVKLHYKHY QFSWGRPHGL VIKQQLECSG EAATLQYSLK SPLTPSQAQR LQLLQTLVLL
PLFNATQFHE MSQQAMYDSL TKLGNRHYYM ESLKKAIATA KRYSNDLSLI VLDLDNFKKL
NDRYGHQFGD NVLSEFGQLL TGAIRNTDQA FRIGGDEFVV VVRGDKQAAS ILCERILSSM
SSLPLFEKHE IQTSLGVSQW INGEVPSALY ERADRALYRA KAAGRQCFRV DGE
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