| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3112 |
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| Symbol | |
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| ID | 5611697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3749856 |
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| End bp | 3750980 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934050 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001474844 |
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| Protein GI | 157376244 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATTT TCAGAACCAA CTCCAGGAAA AAGGGCTTAA CAGGTCTCTT GCTTGTTAGC
TTTCTCAGCG CATGCGAAGC GGAAGTTACT GCTCATGCAA CACAGCCGGA GTTGCAATCA
GTAACAACTA TGACCTTAAC TCCTTCAACC TCATATCTGC ATACCCAAGA GTTCACGGGT
ACGATTCGAG CGGGTAACAC CACGGGGATT GGATTCGAGC TTTCGGGAAA AATCAGGCGA
CTTGCCGTCG ATAGCGGCGA TCAGGTAAAA GAGGGGCAGC TGTTAGCCCA ACTGGATACC
CGCTTATTAG AAGCCGAGAA GCAGGAGTTG GACGCAAGTT TGTCACAAAA TAGTGCCGAC
CTTAACCTGG CCACTAACAC ACTGAACCGA AGCCTTAAAT TAAAGCAGCA AGGTTACACC
TCTGAGCAAC AACTCGATGA ACTCAAAGGC CAGCTGGCCA GTTTGCTTGC GGCCCAAAAA
AGACTCAAGG CATCCATTTA TGCCAATACA TTGAGAATCG AAAAATCGTC ACTGCTTGCG
CCATTTAGCG GCGTGATAAG CAAAAGGAAT AACAACTTAG GTGAAGTGAT CGCACTGGGC
ACCCCGGTAT TTACCCTCAT TGAAAATAAC AATCCGCAAG CATTTGTCGG TGTCCCGATT
AAGGTCGCTC AAAGCCTGAA GGCTGCACAG GATATCTCAC TCAGGGTCGC AGATACCCAC
TACACGGCTC AAATTGCGGG GATTGGAGCC GAAGTTAACC CTATCACTCG CACCGTGCCA
TTAAGGCTAA CGTTACCTCA AGATGCGAGT GTCATTAATG GCGAGCTGAC CTACCTGGCC
TATGAGAATG AGATTGAACA GGAAGGATAT TGGGTGCCGA TCTCATCGCT GACCGATGGT
ATCAGGGGAC TGTGGAACCT GTATGTCATC ACAGCCGGTG AAGCGGCACA AAAACCTGAG
AGTTTCAGCA TAGAACGCAG AGATGTTGAA ATTATCTATA CAAAAAATGA TGAGGCTTAT
ATTCGGGGGG CGGTGAAAAG TGGAGAAGAG TTTATCAGTC AGGGACTGCA TAAACTTGTT
GTGGGACAAA AAGTAAAGCG CAACACCACT GTGGCATCGA GGTAG
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| Protein sequence | MSIFRTNSRK KGLTGLLLVS FLSACEAEVT AHATQPELQS VTTMTLTPST SYLHTQEFTG
TIRAGNTTGI GFELSGKIRR LAVDSGDQVK EGQLLAQLDT RLLEAEKQEL DASLSQNSAD
LNLATNTLNR SLKLKQQGYT SEQQLDELKG QLASLLAAQK RLKASIYANT LRIEKSSLLA
PFSGVISKRN NNLGEVIALG TPVFTLIENN NPQAFVGVPI KVAQSLKAAQ DISLRVADTH
YTAQIAGIGA EVNPITRTVP LRLTLPQDAS VINGELTYLA YENEIEQEGY WVPISSLTDG
IRGLWNLYVI TAGEAAQKPE SFSIERRDVE IIYTKNDEAY IRGAVKSGEE FISQGLHKLV
VGQKVKRNTT VASR
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