| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3105 |
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| Symbol | |
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| ID | 5611117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3742495 |
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| End bp | 3743253 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934043 |
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| Product | flagellin modification protein A |
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| Protein accession | YP_001474837 |
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| Protein GI | 157376237 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.566927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAAG GTAAAACGAT TCTAATCACT GGAGCAGGCG GACTACTCGG TTCTCAAATA
ACCTCTTCAC TTGTTACCAA AGGTGCAAAT GTTATAGCGA CTGATATCTC AGTTTCTGCG
ATGTCGGATA AATTAGAAAT GTTAATGGAC ATTAAGAGCG AATTACTGAC TTTAATCGAG
CTGGACTCTA CAGATGAGCA AGCCATGAAA GCGTTTTTTT CAACACAGAC TGAACTTCAT
GGCGCTGTGA ATTGCACATA CCCCAGAAAC AAACAATATG GGAATTCATT CTTAGAAGTA
TCCTTGGACA GCTTTAACGA AAACGTCTCG CTGCACTTAG GCTCCTCTTT TCTGTTTATG
CAGCAATGCG CCACACAATT CCTTAAACAG CAAGCACCCA TGTCTGTTGT CAATATCTCA
TCCATTTATG GCGTTGTCGC ACCAAAGTTT TCACTCTATG ACGGCACACC TATGACCATG
CCTGTCGAGT ATGCCGCCAT AAAATCAGCT CTGTTACACC TCAACAAATA TGTGACGGCT
TTTGTTAAAG ACAGCCGTTT TAGAGTCAAC AGTATAAGCC CTGGCGGGAT TTTAGATAAC
CAGCCTGAGG AGTTTCTCGC CGCATATAAA AATGAGACTC ATGGTCATGG AATGCTCTCA
CCAGACGATA TGACGGGTTC AGTTATCTTT TTACTTTCAG AGCAAGCGAA ATATATCACC
GGGCAAAATA TAATCATTGA TGATGGGTTT ACGGTATAA
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| Protein sequence | MLKGKTILIT GAGGLLGSQI TSSLVTKGAN VIATDISVSA MSDKLEMLMD IKSELLTLIE
LDSTDEQAMK AFFSTQTELH GAVNCTYPRN KQYGNSFLEV SLDSFNENVS LHLGSSFLFM
QQCATQFLKQ QAPMSVVNIS SIYGVVAPKF SLYDGTPMTM PVEYAAIKSA LLHLNKYVTA
FVKDSRFRVN SISPGGILDN QPEEFLAAYK NETHGHGMLS PDDMTGSVIF LLSEQAKYIT
GQNIIIDDGF TV
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