| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3091 |
|---|
| Symbol | |
|---|
| ID | 5610899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3728055 |
|---|
| End bp | 3728390 |
|---|
| Gene Length | 336 bp |
|---|
| Protein Length | 111 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640934028 |
|---|
| Product | anti-sigma-28 factor, FlgM |
|---|
| Protein accession | YP_001474823 |
|---|
| Protein GI | 157376223 |
|---|
| COG category | [K] Transcription
[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2747] Negative regulator of flagellin synthesis (anti-sigma28 factor) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTG ATATTAAACA AGTAAATACG TCAACACACA CTCACGTGGG TAAAGCCAAA
GCTAATGCCG ATGTTGCCAA AAGTGGTAGT CAGGCGAGTC AGAGCACTGC GGCTACTTCA
ACGAGCACAC CACCTAAGAG TGATTCAGTC TCCATCACTT CTCAGGCTCA GCAGCTACAG
AGCACTCAGG CAAAGCTTGC CGGTATTCCT GAAGTTGATC AGAAAAAAGT TCAAGAGATA
AAACTCGCCA TTGCGGAAGG ACGTTATAAA ATCGATCCTG AAAAACTCGC AACCAATATT
GCTCAGTTCG AAAATGAACT AAAGGATCTC AATTAA
|
|---|
| Protein sequence | MAIDIKQVNT STHTHVGKAK ANADVAKSGS QASQSTAATS TSTPPKSDSV SITSQAQQLQ
STQAKLAGIP EVDQKKVQEI KLAIAEGRYK IDPEKLATNI AQFENELKDL N
|
|---|
| |