| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3033 |
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| Symbol | |
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| ID | 5613365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3666371 |
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| End bp | 3666910 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640933970 |
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| Product | NusG antitermination factor |
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| Protein accession | YP_001474765 |
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| Protein GI | 157376165 |
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| COG category | [K] Transcription |
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| COG ID | [COG0250] Transcription antiterminator |
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| TIGRFAM ID | [TIGR01955] transcriptional activator RfaH |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.201282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00738104 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAGCTT GGTATCTTTT ATATTGTAAG CCTCGCGGAG AATCCAGAGC ACTTCAAAAT
TTAACTATTC AAAATATTGA AACTTACCTA CCAACTATTG CTGTCAAAAA GGAGCAAAAG
GGTCAAGTTT CGGTCGTGAA AACTTCACTC TTCCCAAGTT ACCTCTTTAT TAAGTTTGAT
CCCAAAGAGG TAAGCGTTAG TCGAATAAAT TCGACCCGTG GTGTTGTTCA GGTTGTTGGT
TGTAAGGAGT TGATGACACC AATCGACGAC GGGATTATAG ATGCAATTCG ACAACAAGAA
TACGAGTTGA ACTCGATGAC TCAAGGTTCA ACCGATATCG GTTCGTCTTC CAATGAAGAG
TTTGAACCCA AAGTGATTAA TCCCGGTGAA AAAGTTCGCT TGACTGAAGG AGTATTCTCT
ACTCTTGAAG GGATTTTTCA AGAAAAAAGT GGTGATAAGC GTTGTCATGT TCTATTTGAG
ATAATGGGGG AGATGAAGAG CGTTAAAATT CCCATGTCTA TCGTCAAGCC TTCTGATTAA
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| Protein sequence | MKAWYLLYCK PRGESRALQN LTIQNIETYL PTIAVKKEQK GQVSVVKTSL FPSYLFIKFD
PKEVSVSRIN STRGVVQVVG CKELMTPIDD GIIDAIRQQE YELNSMTQGS TDIGSSSNEE
FEPKVINPGE KVRLTEGVFS TLEGIFQEKS GDKRCHVLFE IMGEMKSVKI PMSIVKPSD
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