| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3028 |
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| Symbol | |
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| ID | 5613613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3658742 |
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| End bp | 3659953 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933965 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001474760 |
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| Protein GI | 157376160 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000329873 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCAAT TTACGTACAA GGCTTACGAT GCCAGCGGCG CAGTTGTGAC CGGTGAAATG
GAAGCTGTTA ACTCTGGACA AGCTAAAGAG CAGTTACTGA GAGATAAACT TCGCCCGGTG
CAGCTCGTCG AAAAAGCGGT TGCTGCAGAA GGAATAAAGC TAAGCTTTGG TAACAATAAC
GTGGTGACGC TGGACGATGT AGAGTTTGTC ACCGCCGAGT TAAGCTTGCT GCTGCAAAGT
GGCGTTAAAA TTGACAAGGC CTTGTCAGTT CTTGCCAGAA CAAAGTCAGG AACCGCACTG
GCTGACTTAC TACAAAAACT ATCCAATGAT GTACGTAAAG GTCAAAGCCT CAGTGAAGCT
ATGGCTAAGC ATCCTAAGGT GTTTGATAAT CTCTATATCA ACCTGGTCAC CATTGGTGAG
TCTAGTGGTA ATCTTGTTGA AGTCTTTGCC GGTTTAGCTC AAGATCTCAA ATACAGAAAA
GAGCTCAAGA GTAAGATCAC ACAGGCAATT GTCTATCCAA GTGTAATTCT GTTGGTCTGT
ATCTGTTCAG TACTATTTAT CTTTAATTTT GTTGTACCTA AACTGACCGT TATGTTTGCC
GATGCGGCAG AGCTCCCCAT CTATACCGAA ATTCTGCTTG GAGTGTCCGA CTGGATCCAA
TCCTATCAGA TCCATCTGTT TGTCGTCGTT GCAGCCATAG CTTTCGGCTT TCGCTGGATG
ATGCAGCAGG GGCATTTTGC TCATAAGTTT GACGACATTG TATTGCAACT TCCTGTGCTG
AGGAATTCTG TTAATTTGGT CGAACGTATC CGGTTTGCCA GTAGCATGTC CTTGATGCTC
AATTCGGATG TTAAGCTAGA TCAGGCCCTA GTATTATCTG CGGGTAGTGT TAAAAACCGT
GTTATCGCGA GAAACCTCTC GGGTGTAAAA GACAAAGTCC GTAAGGGAGA GTCAATTACT
GTTGCGTTAA AGCAGAGTGG TCTATTTCCT GACTTGTTTA TGTCACTGCT CGAAGTGGGT
GAGGAGAGTG GTAAAATGGC GCCTGTATTT GAGGAAATTG CTGGTCGTTC ACGTACCGAG
TTTTCAAATT GGACCGATAA GATGACAAGT CTAATCGAGC CTTTGATGAT CCTCTTTATG
GGGGGGATTG TAGGTTCGGT GGTTGTGGTG ATGATGATGA GTATTGTATC TGTTAATGAT
ATTGGGATTT AA
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| Protein sequence | MAQFTYKAYD ASGAVVTGEM EAVNSGQAKE QLLRDKLRPV QLVEKAVAAE GIKLSFGNNN
VVTLDDVEFV TAELSLLLQS GVKIDKALSV LARTKSGTAL ADLLQKLSND VRKGQSLSEA
MAKHPKVFDN LYINLVTIGE SSGNLVEVFA GLAQDLKYRK ELKSKITQAI VYPSVILLVC
ICSVLFIFNF VVPKLTVMFA DAAELPIYTE ILLGVSDWIQ SYQIHLFVVV AAIAFGFRWM
MQQGHFAHKF DDIVLQLPVL RNSVNLVERI RFASSMSLML NSDVKLDQAL VLSAGSVKNR
VIARNLSGVK DKVRKGESIT VALKQSGLFP DLFMSLLEVG EESGKMAPVF EEIAGRSRTE
FSNWTDKMTS LIEPLMILFM GGIVGSVVVV MMMSIVSVND IGI
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