| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3014 |
|---|
| Symbol | |
|---|
| ID | 5610643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3645209 |
|---|
| End bp | 3645925 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640933951 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001474746 |
|---|
| Protein GI | 157376146 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0480496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000194399 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACAATT CAGCTATTTT ATCTGTACGC AATCTAACAC TCGAATACCA AACCCGTTCT
GGTTTTTTAA AGCTATTTAC TCATAAAGCG ATTGATAATG TGTCTTTTGA GGTACAAAAA
GGTGAAGTAT TTGGAGTCTT AGGTCGTAAT GGTTCCGGTA AGTCGTCACT ATTAAAAGTG
TTAGCAGGTA CTATCCAACC GGATTCTGGA GAGGTAATCT GCCCACCTAA TACAACACGT
TCTTTACTCG CTTTAGGCTT AGGGTTTAAC AATAACCTCA GTGGCCGGGA TAACGCACTT
ATTAGTTGCT TACTCAATGG TTATAGTAAG CAGGAATCAC AACCGATCAT CGAGCAAGTC
AAAGCATTTG CCGAATTAGG TAAGTTTTTT GAACAACCAG TGAAAACATA CTCTGCAGGT
ATGCGGAGCC GATTAGGGTT TGCTACCGCC ATCTTTACTC AAGTTGATAT CATGCTGATT
GACGAAACTT TGAGTGTGGG CGACAGTGCT TTTAAATTAA AAGCAGAAAC CGCTTTAAAA
GAAAAAATAA CCAATAACGA GCAAACAATT ATTTTTGTAT CTCATAGTAT CCAGCAGATA
AAGAAACTGT GTCAACGTTG TCTATGGCTT GAAAAGGGAG TGGCGAAGCA GTTAGGGACA
ACCGATTCCG TCATGGAAAA TTATTTAGCA GATAAACAAG AGACAGTGAA AATATGA
|
|---|
| Protein sequence | MNNSAILSVR NLTLEYQTRS GFLKLFTHKA IDNVSFEVQK GEVFGVLGRN GSGKSSLLKV
LAGTIQPDSG EVICPPNTTR SLLALGLGFN NNLSGRDNAL ISCLLNGYSK QESQPIIEQV
KAFAELGKFF EQPVKTYSAG MRSRLGFATA IFTQVDIMLI DETLSVGDSA FKLKAETALK
EKITNNEQTI IFVSHSIQQI KKLCQRCLWL EKGVAKQLGT TDSVMENYLA DKQETVKI
|
|---|
| |