| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3009 |
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| Symbol | |
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| ID | 5613031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3640987 |
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| End bp | 3641877 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640933946 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001474741 |
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| Protein GI | 157376141 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1216] Predicted glycosyltransferases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0884147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00156221 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACTAAAG TAGCTATTAT CACTCGAACA AAAAACAGGC CTATTTTATT GCCTCGTGTT
AGAGCTAGTG TTGAAAATCA AACTTTTCGA GATTTTGTTT GGGTTTTAGT TAATGATGCT
GGAGAGAGAG GGGAGGTTGA CCGTCAAGCT GATATTGCTC GTACTAATGG GGTGGATGTT
GTTGTTGTCC ACCGTGATAA ATCTGTTGGT ATGGAAGCGG CCAGTAATGA TGGCATGAAA
AAAAGTAGCA GTGAATATGC CGTTATTCAT GATGATGACG ACACGTGGCA ACCTGATTTC
TTAAAACAAA CAGTTGATTA CCTTGATGAA AATATAAGTA ATGTTGGCGT TGTAACTCAC
TCTATTCGAA TAGATGAAGA AATAACTGAT AATCATGTAA AAATTACCGG CAAAAGTTCT
TTTAATGGGC AACTTAATAG CATTAAGCTA AGTGATTTAT CTTTTCATAA TAACTTTCCA
CCTATCTCGT TTTTGTTCAG GAGGAGTTGC TATGATGCTG TTAACGGCTT TGATGAGACC
TTACCTGTGT TAGGTGACTG GGACTTTAAT TTACGCACTT TATTGGAGGG TGATATTGGA
CTTATCCCAG AAGCACTAGC TAATTATCAT TTTAGAATAT CTAATGTTAA AGCAAGTGAC
TCTTATGGAA ATACAGTAAC GGCAGGGATA GATAAACATA TTCAATATGA AGCTATTTAC
CGTAATCGGA AATTACGCAA TGATATTAAT ACGAATAGCT TAGGGTTAGG TTTTGTGTTA
CACCAAGCCT ATGTAGCAGG ACCTAGGCAT CAAAGTTATG TTTCTCTTCT CATTCAAAAG
ATTTTAAAAA AAATTGGCTT GTTTGAGTTT GTTAAGAGGC TTTTAAGTTG A
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| Protein sequence | MTKVAIITRT KNRPILLPRV RASVENQTFR DFVWVLVNDA GERGEVDRQA DIARTNGVDV
VVVHRDKSVG MEAASNDGMK KSSSEYAVIH DDDDTWQPDF LKQTVDYLDE NISNVGVVTH
SIRIDEEITD NHVKITGKSS FNGQLNSIKL SDLSFHNNFP PISFLFRRSC YDAVNGFDET
LPVLGDWDFN LRTLLEGDIG LIPEALANYH FRISNVKASD SYGNTVTAGI DKHIQYEAIY
RNRKLRNDIN TNSLGLGFVL HQAYVAGPRH QSYVSLLIQK ILKKIGLFEF VKRLLS
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