| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3001 |
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| Symbol | |
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| ID | 5613166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3630106 |
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| End bp | 3631671 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640933938 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474733 |
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| Protein GI | 157376133 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4421] Capsular polysaccharide biosynthesis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.489823 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAATA GTGAGTACCT TTTAAGTAAT CTAGACGATG TCATAAGCGT TAACTCTTCT
TCTCTTTCAG AGTTGGCTCA AGTAATTGAC AAAAATTTAG GTTTTCTCAA TATTGCTAAA
TCAAGAACTA GAATTCGGCC AGACCCTTTT CTTCCTCCAT ATGGGGCAAA AAAGTTTTTC
AATCCTATTG AAAAATATGA TGAGAATATG CATCTGATTG CTTTTCTAGC AAAGCAAGCT
ATTTCTAATT CAAGAGTCAA CACACAAGCA TATAACTTGT TGGCCTCTAG CTTATATAAT
CTAAATATGA TGCAACAAGT TATAGAGGTT ATTGAGTGTG CAGAGAAGTA TGATATTTCC
ACTACTTTAT TAAATGAGCT ACAGAGCAAG GCCACTTTAG AGCTTGGTAT ACGTGAAACA
ATCAACCAAA AATTTACACA ATTAGGATAC GAAAATGTTG AACAGTTTGA ACATATGCAA
CTATCACCGT TCTTATCTTA TAAAGGTTGG GCTAAAGAAA TTAGTGGGAA ACTCATAACA
ATTTGCGATA CAAAAAATAC TGTATCAAAC ATTTATCGGC ATGCTCATCA GGATTTTGAT
GACGTAAAGG TACATACAAA CAAAATAAGT GCAGAACCTT TGGTTGGTAT CCAAGTTAAG
CAACTAAATA TCCTTTTAGG TACTATTCCC TTTATCGATA ATAAAGGGCT ATATGAGTTG
GACTTACTAC ATAATCATCT GAAAAAACAA TTGGTTAAAG TTGCGGACAC AAGTTTACTT
TATAACCCTG CACAGCTAGA TAAGTATTTA TTTAGCGGAA AGTATCTAAT TTCTGCTGTT
CCGAATAATT ATTTTACAAA TTACTTTCAT GCTTTAATTC AAGTTAGCTC TAGAATATTA
CTTACTATTG AGAACCCTGA ATTCGATGAT CATAAAATTC TCATGCCTGA CAATACCCCC
AGGTGGGTGA TAGAATTCCT CATTTTAGCT GGCGTTACGG AGTCTAGAAT TGATATTATG
CCAACAAATG GTATATCGAC TATAGAACAC GCAACGATCC TCCCTATGAA TTGGGATGTA
TGCCCTAATG AAATAGCTGC ATCACGAAGA GCATTATTGA AAAATAATAG CTCATTAGCA
GGCAAGAAAG ATTATTACCT TATTCGAAAG GATGTTCAAA ACTACACACG GGCATTGGTA
AATGAAGAAG AAATAATTGA TGCCTGTAAC CAGAGAGGTA TTGAGGTTAT TGATCCCCTT
GATTATACCT TACCAGAACA AATGCAACTA TTTTCTAACG CTCGTACATT GATCTCTAGT
GGGAGCTCAT CAATTACCAA CATGTTGTTT GCAGGTCCTG AAACTGAGAT CATTATTCTT
GGCCCTCGCT TATTTTGGGG AATGTTATTT CCTGACATGG CAGCGGCATG CGGCCATAAT
TTTTCAGTTG TTTTTGGTGA CTTTATCGCA GGTAACAACC ATACAAAAAA TCCTCATAAT
TTGTATGTCT CCGATGTTAA ATCTTTTACT ACTTTATTGG ACGAGCATAT TTGCAACAAA
TGGTAA
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| Protein sequence | MSNSEYLLSN LDDVISVNSS SLSELAQVID KNLGFLNIAK SRTRIRPDPF LPPYGAKKFF
NPIEKYDENM HLIAFLAKQA ISNSRVNTQA YNLLASSLYN LNMMQQVIEV IECAEKYDIS
TTLLNELQSK ATLELGIRET INQKFTQLGY ENVEQFEHMQ LSPFLSYKGW AKEISGKLIT
ICDTKNTVSN IYRHAHQDFD DVKVHTNKIS AEPLVGIQVK QLNILLGTIP FIDNKGLYEL
DLLHNHLKKQ LVKVADTSLL YNPAQLDKYL FSGKYLISAV PNNYFTNYFH ALIQVSSRIL
LTIENPEFDD HKILMPDNTP RWVIEFLILA GVTESRIDIM PTNGISTIEH ATILPMNWDV
CPNEIAASRR ALLKNNSSLA GKKDYYLIRK DVQNYTRALV NEEEIIDACN QRGIEVIDPL
DYTLPEQMQL FSNARTLISS GSSSITNMLF AGPETEIIIL GPRLFWGMLF PDMAAACGHN
FSVVFGDFIA GNNHTKNPHN LYVSDVKSFT TLLDEHICNK W
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