| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2991 |
|---|
| Symbol | |
|---|
| ID | 5610503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3622847 |
|---|
| End bp | 3623749 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640933931 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001474726 |
|---|
| Protein GI | 157376126 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGGTA AACAAATTAC TTTCACAATC CCTTTTTATG AAAATGAGAT CTTACTTAAA
AAAACGGTAG AGAGTGTACT GGCGCAATCT ATACCTGATT GGCTTTTAAT CATATCTTTG
GACTCTAAAT TATCAAATGA GTTCATTAGC TATCTTAGAA GGCTCAATGA TAATAGGATT
TCAGTTATTG AAAATGAAAG CAGCAACAAA GGTATTTGTG GGAATTGGAA TAATTGTATT
GATTCAGTTG AATCTGAATA TGTCACAATT CTTCACTCAG ATGATGAGTT GATCCCAAAT
TATATTGTTA CAATGCTTGA GGCAATGAAT GAAGCACCTG ACAATGCTTT TTATTTTTGT
GCTGTAAAAG TCATCGATAT AAACTCCCAA GCAACTTTTT CGTTTGCTGA CAAAATTAAG
AACTATATTA AACCAAACAA TAGTATTGTT AAACTTACTG GTGACAATGG TTTAGCGAGC
TTATTAAAGG GCTGTTTTAT TTTTTGCCCT TCAATTTGTT ATAAAACTTC TGTTATTAAA
AAGTATAAGT TTCGTGAAAA GTGGAAAATG GTTCTTGATC TAGATTTGTA TGCCCGCTTG
CTATTTAATG GTTATAGCAT GTACGGAACT TCTAAGGAAG CCTACCGCTA TAGAAGGCAT
GATAATAATC AAACAGCTAA GTTGACTAAA GACTTTAAAC GATTTGATGA GGAGGTTTTA
TTGTATGATG ATATATCTAG AAAAGCTAAG AAAAATGGCT GGAAGAACAC TGAACGAGTT
GCGAGGAATA AAACTATTAT AAAACTTCAT TTATTGTTTC TGGTGACGAA GTCTGCTTTT
TTATTAAACT TTAAGCGCTG CAGGCAAGTG CTAGAATATT TTTTAAGATT GATAAAAATA
TGA
|
|---|
| Protein sequence | MQGKQITFTI PFYENEILLK KTVESVLAQS IPDWLLIISL DSKLSNEFIS YLRRLNDNRI
SVIENESSNK GICGNWNNCI DSVESEYVTI LHSDDELIPN YIVTMLEAMN EAPDNAFYFC
AVKVIDINSQ ATFSFADKIK NYIKPNNSIV KLTGDNGLAS LLKGCFIFCP SICYKTSVIK
KYKFREKWKM VLDLDLYARL LFNGYSMYGT SKEAYRYRRH DNNQTAKLTK DFKRFDEEVL
LYDDISRKAK KNGWKNTERV ARNKTIIKLH LLFLVTKSAF LLNFKRCRQV LEYFLRLIKI
|
|---|
| |