| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2925 |
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| Symbol | |
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| ID | 5613505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3541041 |
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| End bp | 3541988 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933865 |
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| Product | cytochrome c family protein |
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| Protein accession | YP_001474660 |
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| Protein GI | 157376060 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGAATTC GTGTAAGCAA TATAGTTTAT GGGATAGCAA CTTTGGTGCT GTTCTCTTTT
TCAATACAGG CGGTCCCTTG GGAGGGGTTA ACTTCAGAGC GGCTCAGACT GGAGCTGGAG
ACTAAATTTT CTGAAGGACA ATATTCTAAA AAAGGTGCTG ATTCCTGTCT TATGTGTCAT
AAGAAAAACG CCACTGTTAT GGCGCTATTC GATGGCGTAC ACGGACAAGA TAGCCCTGCA
AACTCACCTA TGGCCGGCCT GCAATGCGAA GCCTGCCATG GTCCCCTAGG GAAACACAAC
AAAGGTGGCA AAGAGTCGAT GATTGCTTTC GGTAAAGAGA GCAAGCTTGA TGCTGCCAGC
CAAAACAGTA CTTGCCTTGG TTGCCATAAC GACCCGAAAC AGATGGCATG GCACAGCAGC
AGTCATAACC TTGATGAAGT GGCCTGCGTC GATTGTCATA AAATCCATAC TGCCAAAGAC
CCTGTGATGG ACAAACTGAG TGTCAATGAC ATTTGTACAA GTTGTCATGC CGAGGTAAAA
GCGGCGATGA ACAAGCGCTC ATCTCACCCC ATGCAGTGGG ACCAGATGAC CTGTATCGAT
TGTCATAACC CCCACGGCTC CATGGGCGAG AGTGCCCTCA ATCAGTTAAC CGTTAACGAT
ACTTGCTATC GCTGTCATGC CGAGAAGCGT GGCCCATTTT TATGGGAGCA CGAGCCTGTT
GTTGAGAATT GTAGTACCTG CCACAACCCT CACGGCAGTA TAAATTCAAC CCTGCTTAAG
TCTCGTGCTC CTCTTTTATG TCAGCAATGT CATATGGATG ATGGTCATGC CAGCCGAGTG
GTACCACAAG ATGGTCAAGA CGCCTTCGGT GGTGGCAAGA GTTGCCTTAA CTGTCATAGC
CAAATTCATG GCTCTAACCA TCCCGCCGGC AGCAAGCTGC AGCGCTAA
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| Protein sequence | MRIRVSNIVY GIATLVLFSF SIQAVPWEGL TSERLRLELE TKFSEGQYSK KGADSCLMCH
KKNATVMALF DGVHGQDSPA NSPMAGLQCE ACHGPLGKHN KGGKESMIAF GKESKLDAAS
QNSTCLGCHN DPKQMAWHSS SHNLDEVACV DCHKIHTAKD PVMDKLSVND ICTSCHAEVK
AAMNKRSSHP MQWDQMTCID CHNPHGSMGE SALNQLTVND TCYRCHAEKR GPFLWEHEPV
VENCSTCHNP HGSINSTLLK SRAPLLCQQC HMDDGHASRV VPQDGQDAFG GGKSCLNCHS
QIHGSNHPAG SKLQR
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