Gene Ssed_2918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2918 
Symbol 
ID5609704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3532026 
End bp3533435 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content45% 
IMG OID640933858 
Producthypothetical protein 
Protein accessionYP_001474653 
Protein GI157376053 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTAA TACATTTTAG AACAACACGT AAGGCGCTGG TGTTTGCCAG TATGCTAGTA 
ATGCTGTCAG CTTGTGGAGA TGATGACACT GAGGTGATTA TTGTAGAGGT TCCAGTTGAG
ACACCAATTG AAACACCTGT TGAAACACCA GTTGAGACAG TGCCCGAAGA GGTTGTATTA
GAGTATATTG GAACTGAGAA ATGCCTTGCT TGTCATTCAG ATAAGAAATC ATTCTTAGAG
ACAGGTCATA ACATGATGCT AACGGAGGTT GTTAACGATG AGGAGCCTCT ATATCCCTTC
ACATCTGTAA ACGGTGCTGC TGATGTTATT GAGGGTCTTT TCAATACACT TGGTGACCCT
GATGGCTGGA AGGATGTAGG GTATGTTCTT GGCGGGACAA TAACGGCTAA TCTCTTTATT
GATAAGAACG GCTACATTAT GAACGGTCAA AAGGCGGTTA TGTTTCTAAA GCCAAAGGGA
ACGCAAATCA CCTCTGAAAT GATGATGCCA TACATAAGGA GCACTGAGCC GGACGGTCAT
CCCTATGGGC CGTGTGGTAG ATGTCATACC ACAGGCTGGA AAGCTTATAC CTCTGCCTCT
GGTGACGAAA GAAACTTGCA TATGCAGAAT GATCTGGATG GAATGCAAGG CACGTTCGCT
ATGACTGGGA TTCAGTGTGA AAGTTGTCAC GGTGCAGGTA GTGAGCATAT CAAAGGGCCT
TCAAAACATA ACATTGTTAA AATAGCTGAA GCACGAATTG CAGAGGATTT TCTTGCTGAA
GATATGGCGA ATGGTAAAGC TGTTTCATGT GTTGAGTGCC ATACAACTGA AGATGCGCGA
AGACTGTACC CTGATTATGT GACAGAGTAT GAGCACGCAT TCGGTGAGGG TACTATGAAC
TCACGTTTAC CAGTTGTAGG TGAGTTTGGT CAGCCTGAAG GACGTAAAGA TGATGTTAGT
GGTGGCGGTA GACATGCGGC GGCAACGCTT AAACGTGTTG ACCCTAATAC AGGGGTTGCA
ATGGGTAAGA AGAAAGGCTT TACCTGTTCA ACCTGTCACA ATCCACACCA ATCAGCAGTA
AATCATGATA AAGCTGGCCA TGAGAACGCG ATGGTTAGAC AGTGTACAGA CTGCCACACC
AAAGGGTTTG CAGATGTTCA GGGTAGTGAT ATTGCATCGG CAGCACATGA GTTTGTAGCT
GAGTGTACAG ATTGCCATAT GCCTAACAAC TCACATCTGC TTAAGATTGA CCTTGAGGGT
GCAAAGGACG ACCCAAGACA CTTCTCTGCA GACGGTGAGT TTCAAATGCC TTGGCTTCGT
GCTTGGGACA GTTGTTCTGG TTGTCATGCG GAAGACTATG ATGCAAGAGC GCAGAAGATC
GGTAAGATCC ATAAGGATGT AGGCTTCTGA
 
Protein sequence
MNLIHFRTTR KALVFASMLV MLSACGDDDT EVIIVEVPVE TPIETPVETP VETVPEEVVL 
EYIGTEKCLA CHSDKKSFLE TGHNMMLTEV VNDEEPLYPF TSVNGAADVI EGLFNTLGDP
DGWKDVGYVL GGTITANLFI DKNGYIMNGQ KAVMFLKPKG TQITSEMMMP YIRSTEPDGH
PYGPCGRCHT TGWKAYTSAS GDERNLHMQN DLDGMQGTFA MTGIQCESCH GAGSEHIKGP
SKHNIVKIAE ARIAEDFLAE DMANGKAVSC VECHTTEDAR RLYPDYVTEY EHAFGEGTMN
SRLPVVGEFG QPEGRKDDVS GGGRHAAATL KRVDPNTGVA MGKKKGFTCS TCHNPHQSAV
NHDKAGHENA MVRQCTDCHT KGFADVQGSD IASAAHEFVA ECTDCHMPNN SHLLKIDLEG
AKDDPRHFSA DGEFQMPWLR AWDSCSGCHA EDYDARAQKI GKIHKDVGF