| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2916 |
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| Symbol | |
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| ID | 5609939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3529525 |
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| End bp | 3530874 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933856 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001474651 |
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| Protein GI | 157376051 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.266604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGTA ATAAGAAACG TTTCCTGATC CCCGGTATTC TGGCCGGAAT ACTGATCCTG
GTCTTAGCGG TAGTGTTAAA ACCATCCCCA CCGGTTGTCG AGGGTTATGA TAAAGCGAGG
GCGGTTGAAG TTCTCACGCT GGAACAAACG GAGCTGGCTC CAAGAATTCA GGGGTTCGGT
CGAGTGACCC CTAAACATAT ATGGCAAGCA GTAGCCGAAG TGGGGGGGAA AGTCATCTAT
CGTCATCCTC AGCTCGAAAC GGGCCGGATG TTACCAGAGG GGACATTGGT GCTTGAAATC
GATCCGCTGG AATATGAGCT GAAGCTGGCA CAGGCGCAGG CGAGCCTTAA TTCTACCCAG
GCACAACTGA CCAGGCTCGA GCAGCAGGAG CGTAATTATA ATAGCAGTCT GGAGATAGAG
AAGCTGAAAC TGGTCCTCGC TGAGCAGGAA TATCAGCGCA AGCTCACCCT TAAAAAGCGG
AACCTGGTAT CGAGCTCCGA GCTTGAAAGT CAGCATCAGT CTTTGTTGGT TCAAACTAAG
CTGGTGGAAG ATCTACAAAA CTCAATTAAG CTTCTTCCCG ATGACAGGAA AGTGACTCAG
GCGCAGCAGA GTGTCGATAT TGCGCAGTTA GAAGATGCCC GCAGAAGGCT TAAGCAAACC
AAGGTCGTGT TGCCTTTCGA TGCCAGAGTT TCCGATATCA ATATCGAACA AGATCAAGTG
GTTGCTATGG GCTCAACCAT GCTGGTCGCC CATCAACTGG GTACTGCTGA GATTAAGGCC
GAGATATCGC TGCAAGATAT GCGTACCTTA GTGAGCAGTA TTAAAAGGAT CCCGGAAGAA
CATAGCCTCC CCTCATTCGA GCTTCTGGCA CTGCAAGCCA ATGTTGAGTT TCAGATAGGA
AGCAATCGTT TTATCTGGCC TGCCAAGGTC ACAAGGGTGG CAGAAACTGT TAATCCGAAT
CAGGCAACCA TTGGCATATA TCTGGAAGTC GAGCAGGATT TTCGTCAGCT GAAGCCATTC
ATCAGACCAC CTCTGACTAA AGGCATGTTT GTGTCTGCGC TGATATACGG TCAGGCAAGG
CCTCACTTCA TCGTACCAGA GAGAGCATTA CGTGGTGACA AGATATATCT GATGAGCCCG
GACAATAAGC TGATGATCAA GCCGGTGACC ATTTTGTTCC GTAATCAGGA CAAGGTTGCT
ATTCAAGCCG ATGTGGCCGT TGGTGATAAA ATTGTACTGA ACGATCTTAT TCCCGCTATC
CAGGGGATGT CTTTAAAAGA TATCTCATCT GATGCGAGCC CAGATGATGT TGAGCAAACT
CAGGTTAACC AACAGGAGGC AGGTCAGTGA
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| Protein sequence | MTSNKKRFLI PGILAGILIL VLAVVLKPSP PVVEGYDKAR AVEVLTLEQT ELAPRIQGFG
RVTPKHIWQA VAEVGGKVIY RHPQLETGRM LPEGTLVLEI DPLEYELKLA QAQASLNSTQ
AQLTRLEQQE RNYNSSLEIE KLKLVLAEQE YQRKLTLKKR NLVSSSELES QHQSLLVQTK
LVEDLQNSIK LLPDDRKVTQ AQQSVDIAQL EDARRRLKQT KVVLPFDARV SDINIEQDQV
VAMGSTMLVA HQLGTAEIKA EISLQDMRTL VSSIKRIPEE HSLPSFELLA LQANVEFQIG
SNRFIWPAKV TRVAETVNPN QATIGIYLEV EQDFRQLKPF IRPPLTKGMF VSALIYGQAR
PHFIVPERAL RGDKIYLMSP DNKLMIKPVT ILFRNQDKVA IQADVAVGDK IVLNDLIPAI
QGMSLKDISS DASPDDVEQT QVNQQEAGQ
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