| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2848 |
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| Symbol | |
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| ID | 5612449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3446671 |
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| End bp | 3447516 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933767 |
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| Product | thioredoxin domain-containing protein |
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| Protein accession | YP_001474583 |
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| Protein GI | 157375983 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3118] Thioredoxin domain-containing protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000781433 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000282875 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGAAACCG TTTTGGAACT GACTAAAGAG AATATTCAGC AGATAGTAGA TGTTTCAATG
AAGCAGCTGG TTGTCTTATC TTTTTGGTCT CAACAGAGCC CTGAAAGTGT CGCCCTGTGT
CAGACATTGA CATCGATGGC ACAGAAGCAA TCCGGGCGTT TTGTTTTGGC GAAGGTCGAT
TGCGATAAAG AGATGGAGAT CGCTAACTAT TTTCAAATTC AAAATGTCCC AACCACGCTT
GTTCTGAGCG AAGGAAAGCC TATCGATGGA TTTGCAGGAA GCCAGGATGA GGGGCAAATA
TCGGCTATGC TCGACAAGCA CCTGCCTGCC CAGTGGGAGT TGCAACTAAA TCAGGCGAAG
AACCATCTTG CTTTGCACGA GTTTGAACCT GCGCTGGTAT TGTTAAAACA GGCGTTTGCT
GAGTCACCCA ATGCTGAAGT GGCTCTGGTT TATGCCGATG CGCAACTGAT GGCCGGAGAT
CTTGTTACAG CGACCCAGCT CTTGGATAGT GTCGGGCTTG CCGATCAGGA CAGTTATTAT
CAAAGTTTAA AAGCTAAACT TGCGCTTGCA TTGGATGCGG CCGATACACC AGAGATAAGA
CAGTTACAGC AAGCTTTCGA CAGCGAACCA TCAAATATCG CAGTCTTGAT GGAGCTGGTA
AAAGCACTGC ATCAGGCCAA ACGAAACGAA GAAGCGTTGG GGCTGTTATT TACGCCGTTA
TCGAAAGATA TCACAATTGA AAATGGTGAT GCCAAAAAGC TGTTTTTGGA GATATTGACT
GCGTTAGGCC AGGGGAATGC ACTAGCCAAC CAATATAGAC GAAAATTGTA CAGTTTACTT
TATTAG
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| Protein sequence | METVLELTKE NIQQIVDVSM KQLVVLSFWS QQSPESVALC QTLTSMAQKQ SGRFVLAKVD
CDKEMEIANY FQIQNVPTTL VLSEGKPIDG FAGSQDEGQI SAMLDKHLPA QWELQLNQAK
NHLALHEFEP ALVLLKQAFA ESPNAEVALV YADAQLMAGD LVTATQLLDS VGLADQDSYY
QSLKAKLALA LDAADTPEIR QLQQAFDSEP SNIAVLMELV KALHQAKRNE EALGLLFTPL
SKDITIENGD AKKLFLEILT ALGQGNALAN QYRRKLYSLL Y
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