| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2837 |
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| Symbol | |
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| ID | 5613179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3429254 |
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| End bp | 3430255 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933756 |
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| Product | beta-hexosaminidase |
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| Protein accession | YP_001474572 |
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| Protein GI | 157375972 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0312091 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000147131 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTGATC TATTATCGAC CCAAGCGTCA GAGGAGGAAC TGTCACAGCT TCAGCACCCT
ATGGTCGGTG GCGTGATTTT ATTTAGTCGA AACTACTCCA ATCGAACCCA GCTTATCGCC
TTAATTAAGC AAGTGCGATC CGTACGGCCT GATATTCTCA TCGCCGTCGA TCATGAAGGT
GGCAGGGTAC AGAGATTCAG AGACGGTTTT ACCGCTATTC CAGCGATGGG GGATATATTG
CCCATCGCCG GAAAAGACAT GGTGTTGGCA AAATCCTGGG CAGTAGAGCT TGGCTATTTG
ATGGCTATTG AACTCCTTGC CTGTGATATC GACTTAAGTT TTGCGCCAGT ATTAGATTTG
AATGGCATCA GCAAGGTCAT TGGGAAAAGA GCATTTGGTA GTGAGCCGGA TGTGGTTATC
GAGTTGGCCG GTAGTTTTAT CGACGGCATG GAGCAGGCCG GCATGGCGGC AGTCGGTAAA
CATTTTCCTG GCCACGGCAG CGTTGAAGCT GACTCTCATT TCGACCAAGC GGTGGATAAC
CGAACCAGGC AGCAGATTGT CGAATCAGAT ATGCGGCCTT TTAAACAACT CATCGACCAG
GAAAAATTGC ATGGAGTGAT GCCTGCTCAC GTTATCTATC CTAATATAGA TCCTAATCCT
GCAGGTTTTT CCGGATATTG GTTGAAGCAG GTGTTGAGAA ATGAGCTTGC ATTTAAAGGC
GTCATCTTTT CTGATGATCT TGGTATGGAA GGGGCTGGTG TCGTAGGGGG CTATAAAGCG
CGTGCTCAGG CGGCGCTTGA TGCAGGCTGT AATATGATTT TACTCTGTAA TGATGCAGCC
GGTGCGACTG AGGTGTTAAA CGAGTTAGTG TGGCCTGAAA CGCTTCCTGA GCGGCCTGCC
AGTTTATTAA AACCCAGGTT AGATGTCGTT ACCAAGGCGT TAGAGGATGA TGCTAGATGG
ACAAGAGCAA AAGAGATTGC CGGAAAGTTT CCAATTAATT AA
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| Protein sequence | MLDLLSTQAS EEELSQLQHP MVGGVILFSR NYSNRTQLIA LIKQVRSVRP DILIAVDHEG
GRVQRFRDGF TAIPAMGDIL PIAGKDMVLA KSWAVELGYL MAIELLACDI DLSFAPVLDL
NGISKVIGKR AFGSEPDVVI ELAGSFIDGM EQAGMAAVGK HFPGHGSVEA DSHFDQAVDN
RTRQQIVESD MRPFKQLIDQ EKLHGVMPAH VIYPNIDPNP AGFSGYWLKQ VLRNELAFKG
VIFSDDLGME GAGVVGGYKA RAQAALDAGC NMILLCNDAA GATEVLNELV WPETLPERPA
SLLKPRLDVV TKALEDDARW TRAKEIAGKF PIN
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