| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2823 |
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| Symbol | |
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| ID | 5613978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3412072 |
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| End bp | 3412935 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933742 |
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| Product | beta-lactamase domain-containing protein |
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| Protein accession | YP_001474558 |
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| Protein GI | 157375958 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.328939 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0927352 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAA AAATACTAAC ATTGCTATCG ATAAGCTGTT TACTCTCCTC CCCGACCCTT
GCCGATGACG ACAGATTCAA GGATGTTGTC ATCACACCAC AAAAGCTCAC GCAAACGAGT
TACATGTTTA CCGGCTCAGG TGGCAATATT GGCGTCTCGG CCGGTAAAGA CGGCATCCTC
ATTATTGATA ATCAATTTGC CCCGCTGGCA GATAAGATCA CCGCTGCCCT GTCGAGTATA
CAACCCGGAA CACCTAAGTA CGTGGTTAAT ACTCACTATC ATGGAGACCA TACCGGAGGT
AACAACCTCT TCGGTATAAG CGGGATAATT CTTGCTCATC ACAATGTCCT TAAACGCCTA
TCATCAAACA CAAGCTACCA GCCAAGTGCC CTACCCAGCA TCACTTACCA TGAGGGCACC
ACAATCCATT TCAATGGGGA CAGCTTACAA CTGCTTCATA TGGGGCCGGG TCATACCGAC
GGCGATAGTA TTGTGCTCTG GGCGGATAAC AGTGTGGTCC ATATGGGCGA TCTGTTCTTT
AAAGACAAGT ACCCCTATAT TGACCTTAAA GCGGGTGGCT CGGTAATGGG ATACCGGGAC
AATGTGGCTA TCGTTATCGA CAAAATTGGC TCACAGACTA AGGTGATCCC GGGACATGGT
GGACTTGCGA CTAAAGACGA TCTTATTCGC TTCAAGCAGA TGATCGATGG ATCGATTAAT
TGGATGGAGA GTCAGTTATC TGATGGAGCA ACACTCCGGC AGGTACAAGA GAAGGGGCTA
CCAGAGCAAT GGAAACACTG GGGCTGGTCG TTTATTTCAG AAGATAAATG GATAGCCACC
TTGTACGAAG GACTGAAGCG CTAA
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| Protein sequence | MKTKILTLLS ISCLLSSPTL ADDDRFKDVV ITPQKLTQTS YMFTGSGGNI GVSAGKDGIL
IIDNQFAPLA DKITAALSSI QPGTPKYVVN THYHGDHTGG NNLFGISGII LAHHNVLKRL
SSNTSYQPSA LPSITYHEGT TIHFNGDSLQ LLHMGPGHTD GDSIVLWADN SVVHMGDLFF
KDKYPYIDLK AGGSVMGYRD NVAIVIDKIG SQTKVIPGHG GLATKDDLIR FKQMIDGSIN
WMESQLSDGA TLRQVQEKGL PEQWKHWGWS FISEDKWIAT LYEGLKR
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