| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2796 |
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| Symbol | |
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| ID | 5613512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3369703 |
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| End bp | 3376164 |
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| Gene Length | 6462 bp |
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| Protein Length | 2153 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933715 |
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| Product | fibronectin type III domain-containing protein |
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| Protein accession | YP_001474531 |
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| Protein GI | 157375931 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATGGAG TTGCATTAGC TGATGCCGAT GGTGATTTAG CGGCCAGCGC CGGAGTCACC
GAGCCGATCG CTTTACCCAC AACAGTCACC ACCACAGGTG CGGCGGTTGA TATCTTTGAT
TTTACTTTAT CCGATGGCGG CGGCGGTGAC GGATTGGCGA TGGATATCAG CCAAATAGTG
GTCAATGTCA CCGGTACCGG TGATGAAAAC AAAGTCGTGT TTCGCTTAAA CGGCCCGGAT
GCAACCAATG TCGTCGGCAC CGTTGGCGTT GATACCATCA CCTTCAGTGG CCTGACAATT
TCGGTCGCCG ATGGTCTTTC TGAAGTCTAT ACGGTTAATG CTTATTACGG TGACAACACC
GGCTTAACGG AAGGGCAAAC GTATATTCTG TCGGTGGATG GTGACACCGA TGTCACCAGT
GCCGGCGGCA CTACGATGGG TGCCACCACG GCCGTGAACA ACGGCAGTGG TACAACGGTC
GATGTCACCG CGACACAGTT GGTGTTCACT GCTCAGCCCA GTGCTTCAGT GGTAACCAGT
GTCAATATGG GACCCGTTAC CCTGCAGGCT CAGGATACGG CGGGCAATGT CGATACCAAC
TTTATTGAGA CCGTTACGTT AACTGATGAA AACCAGGGCG CTGAAACGGA TGCAACGGGT
ACACTATCGA CGACGTCGAA TGGTAACAGC CTGGCTGTTG CCGCCACTGC CGGTCAGGTG
TCCTGGGCTG ATTTGACCTA TAACGTCATT GCTGCAATCA ATATCGATGC AAATTCAACC
AGCTTTAATG TGGAAAGCAG TAACGTCTCG GTCACGGGAA ATACCGATGG CGATTTAACC
GCCAGCGCCG GAGTTACTGA GCCGATCGCC TTACCGACTA CTGTCACCAC TACAGGAGCG
GCGGTTGATA TCTTTGATTT TACTTTAACC GATGGCGGCG GCGGTGACGG ATTGGCGATG
GATATCAGCC AAATAGTGGT CAATGTCACC GGTACCGGTG ATGAAAACAA AGTCGTGTTT
CGCTTAAACG GCCCGGATGT AACCAATGTC GTCGGCACCG TTGGCGCTGA TACTATCACT
TTCAGTGGCC TGTCGATTTC AGTCGCCGAT GGACTTTCCG AAGTCTATAC GGTTAATGCT
TATTACGGTG ACAACACCGG CTTAACGGAA GGGCAAACGT ATATTCTGTC GGTGGATGGT
GACACCGATG TCACCAGTGC CGGCGGCACC ACGATGGGCG CCACCACGGC GGTGAACAAC
GGCGGTGGTA CAACGGTCGA TGTCACCGCG ACACAGCTGG TGTTCAGTGT TCAGCCCAGT
GCTACAGTAG CGACCAGTGT CAATATGGGA CCCGTTACCC TGCAGGCTCA GGATGCGGCG
GGCAATGTCG ATACCGACTT TACTGAAACC ATTACGTTAA CCGATGAAAA CCAGGGCGCT
GAAACCAATG CGTTGGGGAC ACTATCGACG ACGTCGAACG GTAACAGCCT GGCTGTTGCC
GCCACTGCCG GTCAGGTGTC CTGGGCTGAT TTGACCTATA ACGTCATTGC CGCAATCAAT
ATCGATGCAA ATTCAACCAG CTTTAATGTG GAAAGCAGTA ACGTCTCGGT CACGGGAAAT
ATCGATGGCG ATTTAACCGC CAGCGCCGGA GTTACTGAGC CGATCGCCTT ACCGACTACT
GTCACCACTA CAGGAGCGGC GGTTGATATC TTTGATTTTA CTTTAACCGA TGGTGGCAGC
AGTGATGGGT TGACCATGGA TATCAGCCAA ATCGTGGTCA ATGTTACCGG TACCGGTGAT
GAAAACAAAG TCGTGTTTCG TTTAAACGGC CCGGATGTAA CCAATGTCGT CGGCACCGTT
GGCGCTGATA CTATCACTTT CAGTGGCCTG TCGATTTCAG TCGCCGATGG ACTTTCCGAA
GTCTATACGG TTAATGCTTA TTACGGTGAC AACACCGGCT TAACGGAAGG GCAAACGTAT
ATTCTGTCGG TGGATGGTGA CACCGATGTC ACCAGTGCCG GCGGCACCAC GATGGGCGCC
ACCACGGCGG TGAACAACGG CGGTGGTACA ACGGTCGATG TCACCGCGAC ACAGCTGGTG
TTCAGTGTTC AGCCCAGTGC TACAGTAGCG ACCAGTGTCA ATATGGGACC CGTTACCCTG
CAGGCTCAGG ATGCGGCGGG CAATGTCGAT ACCGACTTTA CTGAAACCAT TACGTTAACC
GATGAAAACC AGGGCGCTGA AACCAATGCG TTGGGGACAC TATCGACGAC GTCGAACGGT
AACAGCCTGG CTGTTGCCGC CACTGCCGGT CAGGTGTCCT GGGCTGATTT GACCTATAAC
GTCATTGCCG CAATCAATAT CGATGCAAAT TCAACCAGCT TTAATGTGGA AAGCAGTAAC
GTCTCGGTCA CGGGAAATAT CGATGGCGAT TTAACCGCCA GCGCCGGAGT TACTGAGCCG
ATCGCCTTAC CGACTACTGT CACCACTACA GGAGCGGCGG TTGATATCTT TGATTTTACT
TTAACCGATG GTGGCAGCAG TGATGGGTTG ACCATGGATA TCAGCCAAAT CGTGGTCAAT
GTTACCGGTA CCGGTGATGA AAACAAAGTC GTGTTTCGTT TAAACGGCCC GGATGTAACC
AATGTCGTCG GCACCGTTGG CGCTGATACT ATCACTTTCA GTGGCCTGTC GATTTCAGTC
GCCGATGGAC TTTCCGAAGT CTATACGGTT AATGCTTATT ACGGTGACAA CACCGGCTTA
ACGGAAGGGC AAACGTATAT TCTGTCGGTG GATGGTGATA CCAATGTCAC CAGCGCCGGT
GGCACCACCA TGGGCGCCAC CACTGCGGTG AACAATGGCA GTGGTACAAC GGTCGATGTC
ACCGCGACAC AGCTGGTGTT TACAGCTCAA CCAGTATCTG CCGTGATTCA AGGTGCCAAT
ATGGGACCCG TTACCCTGCA GGCTCAGGAC GCGGCGGGCA ATGTCGATAC CGACTTTACT
GAAACCATTA CGTTAACCGA TGAAAACCAG GGCGCAGAAA CCAATGCGTT GGGGACACTA
TCGACGACGT CGAACGGTAA CAGCCTGGCT GTTGCTGCCA CTGCCGGTCA AGTGTCCTGG
GCTAACTTGA CCTATAACGC CATTGCTGCG ATCAATATTG ATGCAAACTC AACCAGCTTT
AATGTGGAAA GTGGCTTTGT TACGGTTTCT ACGAATAATA CCGCACCTGT AATAACTCAA
GGCACTTCAA CAGCCGTAAC TATGGATGAA GACGGAAGCC CTACAAGTTT TTCTCTTACT
TTGAATGCAA CGGATGCTCA GGGGAATACC CTAATATGGA GTATTCAAAC GCCAGCTATT
AATGGTACTG CAAGTGTTTC AGGTACTGGC ACATCTAAAG TAATTGGCTA TACTCCAAAC
CAAGATTTTA ACGGCAGCGA TAGTTTTGCT GTTAAAGTTG ATGATGGCAA TGGACTGAGT
GATAGCATCA CTGTCAACCT TGCTATCGCC CCTATAAATG ACGTCACGGT TATTACCGAT
CAAGCTGTAA GCACTGGCGA AGAGGTTGCA CTGGCGATTA CTTTATCTGG TACCGATGCT
GACGGTGATG CTTTAACTTA TTCTGTCGTT AGTCAACCAT CACATGGCGT ACTCAGCGGA
GAAGCCCCCA GCTTAACTTA TACGCCTAAT GTTGATTTTG TCGGTTTAGA TAGTTTCACA
TTTAAAGCCA ACGATGGCTT TGTTGATTCC GATATTGCTA CAGTTAGCAT TACTGTCAGT
AATGATAATG ATGCTCCGGT TATTACCAAC CAAGTTGTAA GTACTGATGA AGAAGTCACA
TTGGCAATTA CATTAACGGG AACTGATGCT GACGGAGACA CATTAACTTA TTCTGTCATT
AGTCAACCAT CACATGGTGT ACTCAGCGGT GAAGCTCCCA GCTTAACTTA TACGCCTGAT
GATGATTTTG CTGGCGAAGA TAGCTTCACC TATAAGGCCA ATGATGGCAA GTTGGATTCC
AATAACGGAA CAATTAGTAT TACTGTCAGT AATGATAATG ATGACCCGGT GGCGGTTGAT
GATGAGGTCA CCTTACTGTC TGGTGAATCG ATAGAAATCT TGGTATTGGG CAATGATACT
GACGCTGACG GAGACACGTT AACAGTTGTA GCATCTTCTG CTGATCTAGG TGCTACCACT
GTCCAAAATA ATAGTACCGT TTTATACCAA TCATTGGCCG GCTTTGTAGG TGATACAGTC
GTTCAATATG GTATTACCGA TGGAAATGAT GGCAACGCGA CCGCAGAAAT ATTGATCCAC
GTATTAGCTA TGGATGATGA AAGCCTTCCC GTTATTACTC TGCCCGAAAA TATTGATATT
AATGCCAGCG GATTCCTAAC TCAGGTTGAT TTGGGAGTTG CTGTTGCTGT AGATAGCAGC
GGCAACCCCG TTCCAGTTAC TTTATTAGAT GACACTAACT ATTTCACACC AGGTAGGCAT
TTTGTGTATT GGCAAGCCGT TGACGCCAAG GGGAATAGTG TGACAGCCGC ACAAATGGTT
AAAGTAAACC CGGTGATTTA TTTGTCTCAG GAGCAAACGG TTGCAGAAGG CCAAAATGTA
ACAGTTGATA TTCTTCTTAA CGGGGCTTCT CCTGATTATC CTTTAGAGAT CAATTACAGC
TTATTGGGCA GTGCTGATGT CAGTGACCAT GATTTAACCG ATACAGTTTT GGTTATTGAA
TCTGGTATTG AGGGGCATAT TGAATTCAGA ACCTATGATG ATGAGATTTC AGAAGGGGAC
GAATTATTAC AATTGACTTT AGATCCGTTA CTGAATTCAA ATTCAATAAC TCATAATATA
ATTATTACTG AAAATAATAT TGCTCCTATT GTGTCACTTG ATGTTCAGCA AGATGGAATT
TCAAGCATAC TATTATCTCA ACGCGGAGGA GATGTAGTTG TTATCTCGAC ACTGTTTGAT
GGTAACAAAG ACGACAATCA TATATACGAT TGGAGCGCTA GTTCGGAAGA GTTAATAGAT
TTAGATATTG ATGAACTTCG CTTTACTTTT TCCCCTCTTG AATTAAACAG TGGTACCTAT
GAAGTCAAAC TGTTAGTCAG TGATGATGGA GTACAACCAC TAAGCCATGA AGTCAGTCTG
TTTATTGAAA TCATAGACAA CTTGCCAGTA TTGACCAATG ATGACTCTGA CGGTGATGGC
ATTCCGGATA TTCGCGAAGG CTTTGGGGAT GATGATGCTG ATGGTGTTCC TGATTACCTG
GATAATATTG CTGCCTGTAA TATCTTGGTA GAGCAAGTTG ATCAAAACTC AAACTTTTTA
ATAGAAGGGG ATAACAGTGG TTGTTTATCT TTGGGAGCGG CAGTTATGGG AGGAGAAAGC
GGTGGAGCCA TTCTTTCTGA TGGCAGCGTA CAAAGTAATT CGATTCCCGA AGACAGTGAG
ACAATAAATA TTGGTGGCAT TTTTGATTTT ATTATCTCTC AAATTATCAA AGGACAGGTG
TACCCTATTA CTTTGCCACA ACTACAACCA ATTCCCACGG ATGCTGTTTA CAGAAAGTAT
CTTCCTGGTA TTGGCTGGAC TAATTTTGTC GAAGATGCCA ATAATCAGAT AGCTAGTGCT
CAAGGTGAAG CGGGTTATTG CCCTTCACCT GACAGTGAAG ACTACCAACT TGGGTTAACT
GAGGGGTATT GGTGTGTTCG GTTAATGATA GAAGATGGTG GACCAAATGA TGCTGATGGT
GTAGCAAATG GGATGATTTT CGACCCTGGT GGGGTTGTGA TTTTTGCTTC TGCTAACACT
TTCCCTGTTG CTAATGATGA TGCAGTCGAA ATTGGCAAGA ATGAAACGGT TACTATAGAA
GTACTTGAAA ACGATAGTGA CACTGATGGT GATATATTGA GCATATTGAG TGCGACAGCT
CAGCATGGCA ATGTGGAAAT TAGTAACGAT ACATTAATCT ATTCAGCTCC TGAAGGTTAT
TTAGGCGATG ATGAAATTAG CTATGTTATT TCAGATAATA ATGGTGGTAA CGATAATGCC
AGAGTCGCCA TTCAAATTCG AAATAGATCG CCAATAGTTA ACAATGACTT AGCTTATACA
AACTCAGGGG TTACTATAAT AATTGATGTT CTGGGCAATG ATACTGATGC AGATAATGAT
CAGCTCACAA TAGTGTCTGC AACAGCTGAG TTTGGTTTTG TCAGTATTAA TGAAGAGCAA
ACATTAAAAT ATACGTCATC AGCATCTTTT ATCGGAACTG ATACAATTGA GTATCTGGTT
AGTGATGGTG TTGGGGGGAC TGGCCAAGGA ACGGTTGAAG TTATTGTTTT TGCCACTCCC
TCTACCTCTA CCAAATCTAG TGGTGGGGGA GCTCTCAACT TTTATTGGAT ATTATTAATT
CTTATCTATT TATATGGAGT ACGGAGTAAG GTGAACTCAT AA
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| Protein sequence | MNGVALADAD GDLAASAGVT EPIALPTTVT TTGAAVDIFD FTLSDGGGGD GLAMDISQIV
VNVTGTGDEN KVVFRLNGPD ATNVVGTVGV DTITFSGLTI SVADGLSEVY TVNAYYGDNT
GLTEGQTYIL SVDGDTDVTS AGGTTMGATT AVNNGSGTTV DVTATQLVFT AQPSASVVTS
VNMGPVTLQA QDTAGNVDTN FIETVTLTDE NQGAETDATG TLSTTSNGNS LAVAATAGQV
SWADLTYNVI AAINIDANST SFNVESSNVS VTGNTDGDLT ASAGVTEPIA LPTTVTTTGA
AVDIFDFTLT DGGGGDGLAM DISQIVVNVT GTGDENKVVF RLNGPDVTNV VGTVGADTIT
FSGLSISVAD GLSEVYTVNA YYGDNTGLTE GQTYILSVDG DTDVTSAGGT TMGATTAVNN
GGGTTVDVTA TQLVFSVQPS ATVATSVNMG PVTLQAQDAA GNVDTDFTET ITLTDENQGA
ETNALGTLST TSNGNSLAVA ATAGQVSWAD LTYNVIAAIN IDANSTSFNV ESSNVSVTGN
IDGDLTASAG VTEPIALPTT VTTTGAAVDI FDFTLTDGGS SDGLTMDISQ IVVNVTGTGD
ENKVVFRLNG PDVTNVVGTV GADTITFSGL SISVADGLSE VYTVNAYYGD NTGLTEGQTY
ILSVDGDTDV TSAGGTTMGA TTAVNNGGGT TVDVTATQLV FSVQPSATVA TSVNMGPVTL
QAQDAAGNVD TDFTETITLT DENQGAETNA LGTLSTTSNG NSLAVAATAG QVSWADLTYN
VIAAINIDAN STSFNVESSN VSVTGNIDGD LTASAGVTEP IALPTTVTTT GAAVDIFDFT
LTDGGSSDGL TMDISQIVVN VTGTGDENKV VFRLNGPDVT NVVGTVGADT ITFSGLSISV
ADGLSEVYTV NAYYGDNTGL TEGQTYILSV DGDTNVTSAG GTTMGATTAV NNGSGTTVDV
TATQLVFTAQ PVSAVIQGAN MGPVTLQAQD AAGNVDTDFT ETITLTDENQ GAETNALGTL
STTSNGNSLA VAATAGQVSW ANLTYNAIAA INIDANSTSF NVESGFVTVS TNNTAPVITQ
GTSTAVTMDE DGSPTSFSLT LNATDAQGNT LIWSIQTPAI NGTASVSGTG TSKVIGYTPN
QDFNGSDSFA VKVDDGNGLS DSITVNLAIA PINDVTVITD QAVSTGEEVA LAITLSGTDA
DGDALTYSVV SQPSHGVLSG EAPSLTYTPN VDFVGLDSFT FKANDGFVDS DIATVSITVS
NDNDAPVITN QVVSTDEEVT LAITLTGTDA DGDTLTYSVI SQPSHGVLSG EAPSLTYTPD
DDFAGEDSFT YKANDGKLDS NNGTISITVS NDNDDPVAVD DEVTLLSGES IEILVLGNDT
DADGDTLTVV ASSADLGATT VQNNSTVLYQ SLAGFVGDTV VQYGITDGND GNATAEILIH
VLAMDDESLP VITLPENIDI NASGFLTQVD LGVAVAVDSS GNPVPVTLLD DTNYFTPGRH
FVYWQAVDAK GNSVTAAQMV KVNPVIYLSQ EQTVAEGQNV TVDILLNGAS PDYPLEINYS
LLGSADVSDH DLTDTVLVIE SGIEGHIEFR TYDDEISEGD ELLQLTLDPL LNSNSITHNI
IITENNIAPI VSLDVQQDGI SSILLSQRGG DVVVISTLFD GNKDDNHIYD WSASSEELID
LDIDELRFTF SPLELNSGTY EVKLLVSDDG VQPLSHEVSL FIEIIDNLPV LTNDDSDGDG
IPDIREGFGD DDADGVPDYL DNIAACNILV EQVDQNSNFL IEGDNSGCLS LGAAVMGGES
GGAILSDGSV QSNSIPEDSE TINIGGIFDF IISQIIKGQV YPITLPQLQP IPTDAVYRKY
LPGIGWTNFV EDANNQIASA QGEAGYCPSP DSEDYQLGLT EGYWCVRLMI EDGGPNDADG
VANGMIFDPG GVVIFASANT FPVANDDAVE IGKNETVTIE VLENDSDTDG DILSILSATA
QHGNVEISND TLIYSAPEGY LGDDEISYVI SDNNGGNDNA RVAIQIRNRS PIVNNDLAYT
NSGVTIIIDV LGNDTDADND QLTIVSATAE FGFVSINEEQ TLKYTSSASF IGTDTIEYLV
SDGVGGTGQG TVEVIVFATP STSTKSSGGG ALNFYWILLI LIYLYGVRSK VNS
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