| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2788 |
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| Symbol | |
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| ID | 5613310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3360960 |
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| End bp | 3362429 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933707 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474523 |
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| Protein GI | 157375923 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTGA AAGGATTTTT AACCTGTTTA ATGGCTGTAC TTATCATGTT TTGTACAAGT
GTACAGGGTA AGCAACTTGT AGCGGATAGT GGTTTTTCCG CGCAGGCACT TAAAAGCTGC
AATACAGATT TGCGTTACCT TAATCAGGTT ATCGGTTGGC AAGTTAAGTG GCCCAGACAG
TGGCAAAGCA CCATAACAAC CGGACCCGAT GTCGCCAGTG AGGCAATCAC TACCTGGTCT
GAAACCCCCG AAGCATTAAC GCAGGCTATA GAGAGGTTAC GCGTAGGCAT CACCGCTGAA
GAGACTGCGC CGCGTGCGGT AGTTGTTCGG GTTCAGCAAC AAGTTCGCGA TCTTTTGTCT
GCTCTCACCA GTGAGAACTC AAAATACACC TTCAAGAATG TCAAACATAA AAACGCACAA
CAATGGAATG CGTTGATCAC AGAAAATATT GTGCCAGCAG TTTCAGCATT TGAGAGGTTT
CTTCATAACG AATATCTTCC TGTAACTGTT ATGGCTCCAG GACTTTCCAG GCTAAAAGGG
GGGGACAAAT GCTTTTTAGA TGCAGTGACC TGGTGGACTA GCCTAAGTCT ATCTCAGGAT
CAAATTGAAG TGATCGGTAG GCGATTACTC AATGAGTCAC GCACTCAATT GCTGGCGACT
GGGAAAAAAG GCGATACGGT AGCAAGCATA CTTACAGAGC TTCGTAATCA AACATTGGCT
AATCAAACTA CCGCTAAAGA GTTGATTTCC ATCTCAGAAA TAGCGCTGGC TCGAGCGCAA
GATAAAAGCT TGTTGTCATT TTCGAAACGA ACGGAAAAAG AATTTATTGT CAGTGAAATG
CCGAAATACA TGCAAGCTTC CGCTCCAGCT GGTTATTACG GTAGGGCACA AGGCAACGCC
CCAGCCCGCT ATATCATCAA TCCATCGCGA CCTCATGAGC GGCGGCTTAT GGCTGAGGTG
ATCGCTTTTC ATGAAGGTAT ACCCGGGCAC CACTTATGGT TGACATACCC CCGGGATAAT
CCATCCACGG GTTATAATGC CGGTATTCTT GAAGGCTGGG CTCTCTATTC TGAATATCTG
GCCGATGAAA TGAACCTCTA CTCCTCAACG TACGACAGAC AAGGCATGAT CACAAAACAC
CTTTGGACCG CGAGTCGTCT CATTGTTGAG CCTGGCCTTC ACTTGCGAGC TTGGTCGCGT
GAGGATGCTA TTCGTTTCAT GTTGGAAAAT ACGGTGATGT CTCGTACCGA GGTTGAAATT
GAAGTCGACC GTTATATTGC CATGCCAGGC CAATCGCTTA GCTATATGCT TGGTGCTGAT
ATGATTTTGT CCGAACGCAA GCGAGCGAGT GATATTATGG GCGATGCATT TGATATTGCT
GCATTTCATG ATGTAATTCT GGAACCGGGC GTGCGCCCAC TGCCTGAAGT TCGTGAAAAT
ATTAGAGCCT GGGTCCAGTT GGGTAAGTAA
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| Protein sequence | MQVKGFLTCL MAVLIMFCTS VQGKQLVADS GFSAQALKSC NTDLRYLNQV IGWQVKWPRQ
WQSTITTGPD VASEAITTWS ETPEALTQAI ERLRVGITAE ETAPRAVVVR VQQQVRDLLS
ALTSENSKYT FKNVKHKNAQ QWNALITENI VPAVSAFERF LHNEYLPVTV MAPGLSRLKG
GDKCFLDAVT WWTSLSLSQD QIEVIGRRLL NESRTQLLAT GKKGDTVASI LTELRNQTLA
NQTTAKELIS ISEIALARAQ DKSLLSFSKR TEKEFIVSEM PKYMQASAPA GYYGRAQGNA
PARYIINPSR PHERRLMAEV IAFHEGIPGH HLWLTYPRDN PSTGYNAGIL EGWALYSEYL
ADEMNLYSST YDRQGMITKH LWTASRLIVE PGLHLRAWSR EDAIRFMLEN TVMSRTEVEI
EVDRYIAMPG QSLSYMLGAD MILSERKRAS DIMGDAFDIA AFHDVILEPG VRPLPEVREN
IRAWVQLGK
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