| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2763 |
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| Symbol | |
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| ID | 5612476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3331042 |
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| End bp | 3332511 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933682 |
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| Product | nitrite transporter |
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| Protein accession | YP_001474498 |
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| Protein GI | 157375898 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2223] Nitrate/nitrite transporter |
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| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.178731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGTA ATGAAAAATT TAACCTATTT TCCTTCTCCG GAAAGATGAA AATCATGCAT
CTGAGCTGGA TGGCATTTTT TATCTCGTTT GTGGTTTGGT TTAATGCGGC GCCATTGATG
GGTGTGATAG CCGAAAGTCT GGGTTTGAGC AATGGACAGG TAAAGACCTT ATTGATCCTC
AATGTGGCTT TAACCATTCC GGCGCGTGTG ATAATCGGCA TGGTGACGGA TAAATTTGGC
CCCAGACTCA CCTATTCCAT CTTATTGGCC GTCTGTAGTC TGCCCTGCTT TATGTTTGCA
CTGGGAGATA GCTTCGAGCA GTTGGCGTTA GCCCGGTTCC TGCTTGGATT TATCGGTGCG
GGCTTCGTGG TTGGTATTCG CATGGTCAGC GAGTGGTTTC CGGCAAATGA GCTGGGTACC
GCGGAAGGAA TTTATGGTGG CTGGGGCAAC TTCGGCTCTG CGGCCGCGGC CTTTACTCTA
CCTGTTATCG CCATCTTCTT TGGTGGTGAA AATGGTTGGC GATACGCCAT AGGGCTCACG
GGATTACTGA GCTTAGTGTT TGCCTTTATC TATTATTTTA ATGTCACCGA TACTCCTAAG
GGCTCAACCT ACTTCAAGCC TAAGAAAATC GGTGCTCTGG AGGTGACCAG TAAAGGTGAC
TTGCTCCTGC TGATCATAAT GAAGCTGCCC ATGTATGCCA CGCTGGGCCT GCTGGGATGG
AAGTTATCGC CCTCGGGTAT CAATATGCTT ACTCAGGAGG CGGTGAACCT GATTTACGCC
GGCCTCGGTG TGGTGCTGCT GATAGACCTT TATCAAACTT ATCAGATTAA TAAGCACCTC
TTCGATGGAC CGGTACCTGA ATTCGAGCGC TACGCCTTTA AGCAGGTTGC GGTACTTAAT
GTGCTCTATT TTTCGACCTT TGGGTCTGAG CTCGCCGTGG TCTCTATGTT GCCGCTCTAT
TTTGCCGAGA CCTTCGAGCT TGGTCTGGCG CAAGCGGGGA TGCTGGCCTC TACCTATGCC
TTTATGAATT TGGCCTCTCG CCCGGGGGGC GGCTGGATTA GCGACCGTTT CGGCCGTAAA
CCTACTTTGA TGCTCTTAAC AGCAGGCTTG GCGCTGGGCT ATTTAGGCAT GGCTCAGATC
ACCAGCGAAT GGTCATTACC CTTAGCCGTG GTAATGGTGA TGGGATGCTC CTTCTTTGTG
CAGAGTGGTG AGGGCGCCGT GTTTGCTGCC GTACCTCTGA TAAAACGTCG CCTTACGGGG
CAGATAGCCG GGATGACGGG GGCCTATGGT AACGTCGGCG CGGTATTTTT CTTAACGGTT
TACTCTCTGG TATCGACTCA GGCATTTTTC TATGTCATTG CTGCGAGCGC CGTATTGGGG
CTGATAAGCT TGCTGTTTTT GACTGAGCCC AAAGGGCATA TATCCGAGGT GAACGATAAG
GGAGAGGTGA CCCTGATTAG TGTGAGTTAA
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| Protein sequence | MMSNEKFNLF SFSGKMKIMH LSWMAFFISF VVWFNAAPLM GVIAESLGLS NGQVKTLLIL
NVALTIPARV IIGMVTDKFG PRLTYSILLA VCSLPCFMFA LGDSFEQLAL ARFLLGFIGA
GFVVGIRMVS EWFPANELGT AEGIYGGWGN FGSAAAAFTL PVIAIFFGGE NGWRYAIGLT
GLLSLVFAFI YYFNVTDTPK GSTYFKPKKI GALEVTSKGD LLLLIIMKLP MYATLGLLGW
KLSPSGINML TQEAVNLIYA GLGVVLLIDL YQTYQINKHL FDGPVPEFER YAFKQVAVLN
VLYFSTFGSE LAVVSMLPLY FAETFELGLA QAGMLASTYA FMNLASRPGG GWISDRFGRK
PTLMLLTAGL ALGYLGMAQI TSEWSLPLAV VMVMGCSFFV QSGEGAVFAA VPLIKRRLTG
QIAGMTGAYG NVGAVFFLTV YSLVSTQAFF YVIAASAVLG LISLLFLTEP KGHISEVNDK
GEVTLISVS
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