| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2739 |
|---|
| Symbol | |
|---|
| ID | 5610151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3309541 |
|---|
| End bp | 3310572 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933658 |
|---|
| Product | multidrug resistance efflux pump-like protein |
|---|
| Protein accession | YP_001474474 |
|---|
| Protein GI | 157375874 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTTA ATCGCAATCC CGGGGGAGTA AGCCGATGTC AGACCATGCT GATGGCCGCG
CTTTTACTGT CTTTTATCCA AATGTGCGTA GCGAGTGAAG ATATTGGTAC AGCCTCGAGC
AAACAGATGG TGCCTGAACG CCTGTTATTG ACAGGTAAGA TATCATCGGT GAAATCACAG
TCCTTTATGG TGCCCAAAGC CGGTGATGCC TGGCGCTATC AAATTCAATG GATGTTGCCC
GAAGGCTCGA TAGCGACGCC GGGTGATACC GTGGTTATCT TCGATAAGAG TCAGCTCGCC
AATCAAATTG AGCAGTTAGA GGCCAGTCTG CTGCGGGTGA CGGCTCAAGA GCAGAGTCAG
TCTATCGAGC TGACCTCGAG CGTATTACAG GCCAAATTTG ATCTTAAACA GAAAGTATCA
GAGCTCGATA AGAGTCAGCT CGATGCCGAT GTTCCCGCCG ATTATATCGC TGCCAAAGAT
TATGCCGAAA ATCAGTTTAA TTTGATGAAG GCAAAAAGTG AGTTATCTAA GGCCAGGCAA
TCCCTTAAAG AGGTATTAGA CAGACAAACG GCAAGTAAGG CCCAGTTGGC CATAGATAAA
AACCGTGCAA ACCTCGAGTT GGCACAAGCC CTGAATGGTT TAGAGCAGTT AGCGCTGAAA
GCCGAAATAA AAGGTCCGCT GCTCTATAGC AGCGATCCCT GGTCGCAAAA GAAGTATGCC
GTTGGCGATA CGGTGCAGAT AGGCAGGCAG ATAGCGAGCC TGCCAGCCAT GGAAGAGTTA
GAAGTTGTGG CGTGGGTGAA TGAGGTCGAT GTCGATAAAA TCGCTATCGG ACATCCTGTG
ACATTACGAT TAGATTCACA ATCTGATATC AGTTTTAGTG GTGACATTAA GCTCATTGGC
CGACAGGCTC AGAAGCAGGT CGCCTGGGGC AGCAGTAACT GGTTTAAGGT GGAGATCCGT
TTTGAGCCGG ATGAGCGAGT CAAAATCATC CCCGGAATGA GTGTATTAGT CACCGCAGCG
GGGCAGATAT GA
|
|---|
| Protein sequence | MRLNRNPGGV SRCQTMLMAA LLLSFIQMCV ASEDIGTASS KQMVPERLLL TGKISSVKSQ
SFMVPKAGDA WRYQIQWMLP EGSIATPGDT VVIFDKSQLA NQIEQLEASL LRVTAQEQSQ
SIELTSSVLQ AKFDLKQKVS ELDKSQLDAD VPADYIAAKD YAENQFNLMK AKSELSKARQ
SLKEVLDRQT ASKAQLAIDK NRANLELAQA LNGLEQLALK AEIKGPLLYS SDPWSQKKYA
VGDTVQIGRQ IASLPAMEEL EVVAWVNEVD VDKIAIGHPV TLRLDSQSDI SFSGDIKLIG
RQAQKQVAWG SSNWFKVEIR FEPDERVKII PGMSVLVTAA GQI
|
|---|
| |