| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2738 |
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| Symbol | |
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| ID | 5610326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3308345 |
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| End bp | 3309544 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933657 |
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| Product | membrane-fusion protein |
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| Protein accession | YP_001474473 |
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| Protein GI | 157375873 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGTTT CTACAATGAA TAACAAGCGT CACACTCGAC TCAGGCGACT CCTCCCGGCA
GTAACGCTAC TCATGCTGAG CGGCTGTGGC GGCGCGGCCG TGACCAGCGT GGAGCGAGGG
GTATTGAGCC AGAGTATCGA TGTCACGGGT GAGCTTGTCT CGGCCGATAC CATCTCCATG
ATGCCGCCAT CGCTGCGCCG GGTGTGGCAA TACCAGGTTA AACAACTGGC ACCGGAAGGC
TTAGAGGTTA ATCAGGGCGA CATGGTCGCT CAACTGGATA CTTCGGAGCA GACTCAACGT
CTCTCGGTCA AGACGGCCAA GCTTGAGGCA ACGATTCAAG ATATTGAAAC CTCTAAGTTA
CGCAATGCAA AAAGGCTGGA GGAGTTGAGG CTCGAACTGG CGGAAGCACG GATGAACTTT
GAGAAGGCCC AGAGAAAATT CAAACTCTCC GATGACACGG TTGCCGCAAT CGACAAAATA
AAATATGAAA AAGATGCAGA GATCGCGAAA GATAGAGTCG TTCTGACCGA ACAGAAGCTG
GATCTCGAGG CCCAAAGTGC CAGACAGAGA GAGGCGATGT TGATGGGAGA CCAGCAAAAA
TTTGCCTCAG AGGTCGATGC GCTCAAACGT GGGATCGCAT CCCTGACTCT GATTGCGCCG
AGAGCCGGAA TGGTGGTGTA CGGCAATGAC TCTCAAGGTA ATAAGATCAA AGAGGGTCAG
TCTGTGTTTA TGGGTGATGC GGTCTTGAGT ATTCCCGATC TCAATAATAT GCAGGTGAAT
ATGACTATTC CAGAGGTCGA GGCGAGGCGG GTAAAGCTGG GTCAGACACT GAAAATTCGT
CTCGATGCCA ACCCGGATCG TCTCTTTAGC GGAAAGATCA TCGAGCTCGG CGCTGTTTTT
CGTAATAAAA ACCAGGATAT TCCTTTGGTT ATCTTCGACG CTGTCGCCAG CATAGATGAG
GCTGATACCG AACTGATGCG ACCGGGCATG ACCGCTAAGA TATCGATAGA TATTGCCAAC
GATGAAGAGC AACTGCTGCT GTCGTTGGAT GCGGTGCATT ATGATGCCGG TCAAGCTTAC
GTATTAACGC CGGGTCTGTT TGGTGAATCA AAACAAAGCG TGACATTAGG CGCGATAGGC
AAGGAGCTGG TGTCAGTCAC TTCCGGCCTC GAAGTGGGTC AGGAGGTGCT ATTGCCATGA
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| Protein sequence | MMVSTMNNKR HTRLRRLLPA VTLLMLSGCG GAAVTSVERG VLSQSIDVTG ELVSADTISM
MPPSLRRVWQ YQVKQLAPEG LEVNQGDMVA QLDTSEQTQR LSVKTAKLEA TIQDIETSKL
RNAKRLEELR LELAEARMNF EKAQRKFKLS DDTVAAIDKI KYEKDAEIAK DRVVLTEQKL
DLEAQSARQR EAMLMGDQQK FASEVDALKR GIASLTLIAP RAGMVVYGND SQGNKIKEGQ
SVFMGDAVLS IPDLNNMQVN MTIPEVEARR VKLGQTLKIR LDANPDRLFS GKIIELGAVF
RNKNQDIPLV IFDAVASIDE ADTELMRPGM TAKISIDIAN DEEQLLLSLD AVHYDAGQAY
VLTPGLFGES KQSVTLGAIG KELVSVTSGL EVGQEVLLP
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